Salvelinus sp. IW2-2015 (Arctic char): 111976606
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Entry
111976606 CDS
T05762
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111976606
Spliceosome [BR:
salp03041
]
Common components
Common spliceosomal components
General mRNP proteins
111976606
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
RRM_8
CDC45
Motif
Other DBs
NCBI-GeneID:
111976606
NCBI-ProteinID:
XP_023861332
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All DBs
Position
LG17:complement(7524310..7534102)
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AA seq
535 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKSSSANGHEERSSKKKKRSHSRSSRSPSSDKRRSKSKDRK
KSRDRKRSKSREKKRSRSKERRRSGSHSRERAGRYRGRRSPFLGPKFNGGPGGKIGPPHA
NKLSRRRSRSRSPFKKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEDFFSAVG
KVRDVRMISDRNSRRSKGIAYIEFLEANSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAA
MANNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFIS
FADAECAKKALEQLNGFELAGRPMKVGNVTERTDSSTASSFLDNDELERTGIDLGTTGRL
QLMARLAEGTGLQIPPAAQQALQMSGSMHSSSIHFGNMAAGTAVANPALNLGPSMNQAMN
LPTQPLATHCLQLSNMFSPQSENEPGWDIEIQDDVMEECNKHGGIVHIYVDKNSPQGNVY
VKCPTIPTAMAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSVTATQLLMPSRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgattttgacattgaggctatgctagaggctccatacagaaaggatgagatc
aagtcctctagcgctaatggacatgaggagcgcagtagtaagaagaaaaagaggagccac
agtaggagtagtcggagcccgagctctgacaagcgcagaagcaagagcaaagacaggaag
aagagccgggaccggaaaaggagcaagagtcgggagaagaaacgcagccgcagtaaggag
cgccgccgcagtggctcccatagcagggagcgtgccgggcgctacagaggacgccgcagc
ccctttttggggccgaaatttaacggtggtccaggagggaagattggcccaccacatgcc
aacaaactaagtcgtaggcgctcaagaagtcgtagtcccttcaagaaagacaagagtcca
gtaaggcaaccaattgacaacctgaccccagaggagagggatgcccgtactgtgttctgt
atgcagctggcagcaagaatccgaccacgagatctagaggacttcttctctgctgtgggg
aaagtgagagacgtgaggatgatctccgatagaaactcccggaggtcaaagggcatcgcc
tacattgagtttctggaggcgaattcagtcccgctggccattggcttgactggacagaga
cttcttggcgtgcccatcattgtccaggcctctcaggctgagaagaacagagcagcagca
atggccaacaaccttcagaagggtaatgctggccccatgcggctgtacgtgggctctctg
cacttcaacatcacagaggacatgctgcgaggcatcttcgagcctttcggaaggattgag
agcatacagctgatgatggacagtgaaactgcacgatccaaaggatatggtttcatctca
tttgcagatgcagagtgcgctaagaaagcactggagcagctgaatggctttgagctggcc
ggacggcccatgaaggttggtaacgtgacagaacgcaccgactcctccaccgccagctcc
ttcctggacaacgacgagctggagaggacgggcatcgacctgggcaccaccgggcgcctg
cagctcatggcccggctggcagagggtactggtcttcagatccctccagctgcacagcag
gctctacagatgagtggttccatgcactcctcttcaatccacttcggcaacatggcagct
ggtacagctgttgccaaccctgccctgaacctgggtccaagcatgaaccaggccatgaac
ctcccaactcaaccactggctacacactgcctacagctgtccaacatgttcagcccacag
tcggaaaatgagcctggttgggacatcgagatccaagacgacgtcatggaggagtgcaac
aaacatgggggaattgtccatatatacgtcgacaagaactcccctcagggcaacgtgtac
gtaaaatgccccactatcccaacagcaatggctgcagtgaatgccctacatggacggtgg
tttgcaggtaaaatgatcactgcagcgtacgtacccctcccaacctaccataaccttttc
cctgattcagtaacggccacccagctactgatgccttcgcggcgataa
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