Salvelinus sp. IW2-2015 (Arctic char): 111977092
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Entry
111977092 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 8 subunit alpha-like
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
111977092
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111977092
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
111977092
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
Neur_chan_memb
HB_ELP1
Dynamin-like_hel_bact
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
111977092
NCBI-ProteinID:
XP_023862164
LinkDB
All DBs
Position
LG17:complement(30389840..30452247)
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AA seq
1842 aa
AA seq
DB search
MIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKIVARGFCIDGFTFLRDPWN
WLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRQKCVIWPINSTENYLANGSKGFDWNEYINNDTNFYFL
PGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAFLALFRLMTQDFWENL
YMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATMEEAEQKEAEFKAM
LEQIKNQQEAAQANAMATSAGTVSEDVAEDDGGGNLSCSSSEMSKLSSKSAKERRNRKKK
WRQKEQSQREEKGDCEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMNQSLLSIPGSPFLS
RHNSKSSIFSFKGRGKDVGSENEFADDEHSTVEECEERRDSLFSPYRRSSYTGYHHGGGK
RNSTVDCNGVVSLISPGTGGRLLPEVKIDKASADDSDLLQDLKPTTEVEVKKKLSGSLMV
SVDQLNTSFGRKERANSVMSVITNTLVEELEESQRSCPPCWYKFSNIFLIWECCPIWLKI
KEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPHFEEVLSVGNLVFTGIFAVEMFA
KLVAMDPYYYFQEGWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWPTLN
MLIKIIGNSVGALGNLTLVLALIVFIFAVVGMQLFGKNYKDCVCKIALDCKLPRWHMHDF
FHSFLMVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLNLFLALLLSSFSA
DNLAATDDDGEMNNLQISVIRIKKGVAWFKIKLAELVLSLTKKPPAEDEQKPLDDMYNKK
LNCIANHSGVDINRDLDYTKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPIAVG
ESDFENLNTEDFSSESENENSKEGLDDTSSSEGSTIDIKPDVEVEAVVVEAVEEYLDPEN
CWTPECIIKYLACDVPITHGWGKYWWFLRKTCYLIVEHNWFETVIIFMILLSSGALAFED
VYIQQRKTIRTILEYADSVFTYIFILEMLLKWVAYGFHKYFTNAWCWLDFFIVDVSIISL
VANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWL
IFSIMGVNLFAGKYYYCFNQTSEDNFLATEVNNKTQCLALINQNFTEVRWKNVKINFDNV
GAGYLALLQVATFKGWMDIMYAAIDSRRVEDQPIYEDNLYMYIYFVIFIIFGSFFTLNLF
IGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNYIQGLVFDFV
TQQVFDISIMMLICLNMVTMMVETDDQSDETENILYWVNFIFIVAFTIEFVLKLFALRHY
YFTNGWNVFDTVVVILSIAGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRT
LLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDMYNFETFGNSMICLF
MITTSAGWDGLLLPILNYPPDCDPTMENPGAPSTGNCGNPSVGIFFFVMYIIISFLVVVN
MYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPSASQFITFXKLGDLADTLEHPX
RVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRTQMEERFVAANPS
KVSYEPITSTLRRRQEDVSARCIQKAYRAHLLKRGFICKRRPKTKLENGGTNNEEKKEST
PSTASLPSYDSVTKPDKEKQEENEGERKEKDRNQKDERESKC
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgatcattatgtgtactattttgaccaactgtatattcatgacttttagtgatcctcct
gagtggtccaaacaagtagagtacacgttcacagggatttatacgtttgaatctcttgta
aaaattgtcgctcgaggattctgtatagatgggtttacattcctaagggatccatggaac
tggctggatttcatggtcatttctatggcatatataacagagtttgtggacctgggcaat
gtctctgcgctgagaacattcagagttctccgagcattgaaaactatctctgtcatacca
ggcctgaagaccattgtcggtgctctaatccaatctgtgaagaaattgtcagacgttatg
atcctcacggtcttctgtctcagtgtcttcgctctgattggactacagctcttcatgggc
aacctacggcaaaaatgcgtgatttggccaatcaactccaccgagaactacttggccaac
ggcagcaaaggcttcgactggaatgaatacatcaataacgacaccaatttctacttcctg
cctggacaattggatgcccttttatgtggcaacagctcagattctggccgctgccccgag
ggctacacatgcatgaaagctgggaggaatccaaactacggttacaccagcttcgatagc
tttggatgggctttcctggctctcttcagactcatgacacaggacttctgggagaacctc
tacatgctgaccctgcgggcagcagggaagacctacatgatcttctttgtgctggtgatc
ttcgtggggtccttctacctggtcaatctgatcctggctgtggtggccatggcctatgag
gagcagaaccaggccaccatggaggaggccgagcaaaaagaggctgagttcaaagccatg
ctggagcagatcaagaaccagcaagaggctgcacaggccaacgccatggcgacgtcggca
ggcacggtgtcggaggacgtagcggaggacgacggtggggggaacctgtcctgtagctcg
tcagagatgtccaagctcagttccaagagcgccaaggagcggcgcaaccgcaagaagaag
tggcgccagaaagagcagtcacagagggaggagaagggggactgcgagaagttcgtcaaa
tccgagtcagacgacggcagcaagaggagccgcttccgtttccctgacaaccggttgggt
cgaaagtcttccatcatgaaccagtccctcctcagtatcccaggctcgccgttcctgtcg
aggcacaacagcaagagcagcatcttcagcttcaagggccgcggcaaggacgtgggctcg
gagaacgagttcgccgatgacgagcatagcactgtggaggagtgcgaggagaggcgggac
tccctgttcagcccgtaccggcggagcagctacacgggctaccaccacggcggcgggaag
aggaactcaacggtggactgcaacggcgtggtgtcgctgatcagtccggggaccggcgga
cgccttctgcctgaggtgaaaatagataaggcatctgctgacgacagtgatttgttacag
gacttgaagcccactactgaggttgaggtgaagaagaagctgtctggttccctgatggtg
tctgtggaccagctcaatacctccttcggaaggaaagagcgggccaacagtgtcatgagc
gtcatcaccaacacactagtggaggaactggaggagtctcagcgtagttgtccaccttgc
tggtataagttctccaacatcttcctcatctgggagtgttgtcccatctggctgaagatc
aaggagattgtcaacctgatcgtcatggaccctttcgtggacctggccatcaccatctgt
atcgtcctcaacaccctcttcatggccatggagcactaccccatgaccccgcactttgag
gaggtgctgtctgtgggaaacctggtgttcacagggatctttgctgtggagatgtttgcc
aagctggttgccatggatccctactactacttccaggaagggtggaactgctttgacggc
ttcattgtgaccctatcgttagtggagctggcattggctgacgtggaggggctgtccgtg
ctcagatcattccgattgctaagagtgtttaaactggccaagtcgtggcccacactcaac
atgctgatcaagatcatcggtaactctgttggcgccctgggaaacctgaccctcgtctta
gcgctcatcgtcttcatctttgccgtggtcggcatgcagctgttcggcaagaactacaag
gactgtgtgtgtaagatcgccctggactgtaagctgccccgctggcacatgcacgacttc
ttccactcgttcctgatggtgttccgggtgctgtgcggggagtggatcgagaccatgtgg
gactgtatggaggtggccggacagggcatgtgtctcatcgtcttcatgatggtcatggtt
atcgggaacttggtggtgttgaaccttttccttgccttgctgctgtcctcgttcagcgca
gacaacttagccgcaacagacgacgacggagagatgaacaaccttcagatctccgtcatc
cgcatcaagaagggcgtggcctggttcaagatcaagctggcagagttggtgctcagcttg
accaagaagccgccggcggaggatgaacagaaacctttagacgacatgtacaacaagaag
ctgaactgtatcgccaaccacagtggtgtggatatcaaccgcgacctggactacaccaag
aatggtaacggcaccactagtggtatagggagcagcgtcgggaagtacatgatcgacgag
gaccacatgtccttcatccataatccgaacctgaccgtgtgcgttcccatcgcggtcgga
gagtccgacttcgagaacctcaacaccgaggacttcagtagcgagtcggagaacgagaac
agcaaagaggggctggacgacaccagctcatcggagggcagcaccatagacatcaagcct
gatgtggaggtggaggcggtggtggtggaggctgtggaagagtacctagacccagaaaac
tgttggacacctgagtgtattatcaagtacctcgcatgcgacgtgcctatcactcacggg
tggggaaaatattggtggttcctgagaaagacatgctatctaattgtggagcataactgg
ttcgaaaccgtcattatctttatgatcctactcagtagtggggccctggcttttgaggat
gtgtacatccagcagaggaagackatcaggaccatcttggaatacgccgacagtgtgttc
acatacatctttatcctagagatgttgctcaagtgggtcgcctacggattccacaagtac
ttcaccaacgcctggtgctggctcgacttcttcattgtcgatgtgtctataatcagtctg
gtagctaatgcactgggctactcggatctaggtcctattaaatcactaaggacactaagg
gccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtcaacgcc
ctggtgggagccatcccctccattatgaatgtgttgctggtttgcctcatcttttggctg
attttcagtatcatgggagtcaacttgttcgcgggcaagtactactactgtttcaaccag
acctcagaggataactttcttgccaccgaggtcaacaacaagacacagtgcctggccctt
attaatcagaacttcactgaggtcaggtggaagaatgtcaagatcaactttgacaatgtt
ggcgctggatacctggctctgcttcaagtggcgacattcaaaggctggatggacatcatg
tacgcagccatagactccagaagggtggaggaccagcccatctatgaagacaacctctac
atgtacatctacttcgtcatcttcatcatcttcggatccttcttcaccctcaacctcttc
atcggtgtcatcattgacaacttcaaccaacagaagaaaaagtttggaggtcaggacatc
ttcatgacagaggaacagaagaagtactacaacgccatgaagaaactgggttcaaagaag
ccccagaaacccattcccagaccacagaactatatccaagggttggtgtttgactttgtg
acccagcaagtgttcgacatctccattatgatgttgatctgcctcaacatggtcaccatg
atggtggagacagacgaccagtcggatgagacggagaacatcctctattgggtcaacttc
atcttcatcgtggcgttcaccatcgagttcgtactgaaactcttcgccctgcgccactac
tacttcaccaatggctggaacgtgttcgacacggtcgtggtcatcctgtccatcgcgggc
atgttcctggctgacatcattgagaagtacttcgtttcgccaacccttttcagggttatc
cgattggctcgaatcggccgcatcctgcgtctgatcaaaggagccaagggcatacggact
ttactcttcgccttgatgatgtcacttccagccctgttcaacatcggcctcctgctcttc
ctggtcatgttcattttcagcatcttcggaatgtccaacttcggctacgtcaaacacggg
gccgggatagacgacatgtataactttgagaccttcgggaacagcatgatctgcttattc
atgatcaccacgtctgcaggctgggatggtctcttgctccccatcctcaactaccctcct
gactgtgacccaaccatggagaacccaggtgcaccgtctacaggcaactgcggcaacccc
tcagttggcatatttttctttgtcatgtatatcattatttccttccttgtcgtagtcaat
atgtacatcgccatcatcttagagaatttcagtgtagcgacagaagagagcgccgacccg
ctcagtgaagacgacttcgagaccttctatgaaatctgggagaaattcgacccctctgct
tcccagttcatcaccttcskaaaactgggtgacttrgckgacaccctygagcaccctrtc
cgcgttcccaaacccaacaccatcgagctgatcgccatggacatgcccatggtcagcggc
gaccgcatccactgcctggacatcctgtttgccttcaccaagcgtgtgctgggagacagt
ggggagctggacatgctacgcacgcagatggaggagcgctttgtggcggctaacccctcc
aaggtctcatacgagcccatcacttctacactgcgccggcgccaggaggacgtatccgca
cggtgcatccagaaagcctaccgcgctcacttgcttaaacggggcttcatctgcaagcgc
aggcccaagaccaagctggagaatggtgggaccaacaacgaggagaagaaagagagtaca
ccctccaccgcctctcttccctcctacgacagcgtaaccaaacctgacaaggagaaacag
gaggagaacgagggagagaggaaagagaaggacagaaaccaaaaagatgagcgggaatcg
aagtgttag
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integrated database retrieval system
