KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111977239
Entry
111977239         CDS       T05762                                 
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111977239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111977239
   03036 Chromosome and associated proteins [BR:salp03036]
    111977239
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     111977239
Chromosome and associated proteins [BR:salp03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    111977239
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WDR55 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_Aladin ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 eIF2A WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_Nup120_160 WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 Beta-prop_WDR75_1st ExoI_SH3 Beta-prop_WDR41 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 111977239
NCBI-ProteinID: XP_023862377
LinkDB
Position
LG17:12794083..12798928
AA seq 372 aa
MSLFGASTGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPMMSLQLPERCYCADVVYPMA
VVASADRGLIVYQLENQPSEFRRIDSPLKHQVTGLTYQHRCIAIFKDKQNKPAGFALGSI
EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGR
FSFWDKDARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLR
NATEELKPRNKK
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgagtttgttcggggccagcactggttttggcgctgggggatttggagcggcaaccacg
gacacccacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgttcagtccccctgctatgccagggaacttcttgatagggggatcctgggcc
aatgatgtgaggtgttgggaggtacaggacaacgggcagacagtccccaaagcccagcag
atgcacacaggtcccgtccttgatgtctgctggagcgaagacggtagcaaggttttcact
gcgtcttgtgacaagactgccaaaatgtgggacctcaacagcaaccaggcaatacagatc
gcacagcatgatgctcctatcagaacagtccactggatcaaagcccccaactacaactgc
atcatgacaggcagctgggacaaaactctgaagttctgggacacccgctctcccaaccca
atgatgtctctgcagttgccggagaggtgctactgtgcagacgtggtgtaccccatggca
gtggtagcgtctgcagaccgaggtttgattgtatatcaacttgaaaaccagccgtctgag
tttaggaggatagactcaccactcaaacaccaggtgactggtctcacataccagcaccgc
tgcatagccatttttaaggacaaacagaacaagcctgctggatttgctctcggaagcatt
gaagggagggttgccattcactacatcaaccctcctaacccagccaaggataacttcacc
tttaagtgccacaggtcgaatggaaccaacacagccacaccacaagatatctatgctgta
aatgccatctccttccaccctgtccacgggacactggcgactgttgggtcggatggtcgc
ttcagcttctgggataaagatgcccgcaccaagctgaagacctcagagcagctggaccag
ccaatcacagcatgctccttcaacaacaacggcaacatctttgcctacgcctccagctat
gattggtcaaagggacatgagtactacaaccctcagaaaaagaactacatcttcctgcgt
aatgctactgaggagctgaaaccacggaacaagaaatga

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