Salvelinus sp. IW2-2015 (Arctic char): 111977535
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Entry
111977535 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04020
Calcium signaling pathway
salp04080
Neuroactive ligand-receptor interaction
salp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
111977535
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
111977535
04082 Neuroactive ligand signaling
111977535
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111977535
Ion channels [BR:
salp04040
]
Ligand-gated channels
Glutamate (ionotropic)
111977535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
SBP_bac_3
ANF_receptor
MatE
Motif
Other DBs
NCBI-GeneID:
111977535
NCBI-ProteinID:
XP_023862755
LinkDB
All DBs
AA seq
1412 aa
AA seq
DB search
MGLLPGQPPPFLLLFIJFLSSLPPLLSRPLILHPSINVAVMFSGSAYQNEVRGRLSRENF
ADLPLEVNPVTVLVNDTNPRALLTRLCQTMATEKLHGVVFEDDVGSGAGPQVAEVAQILD
FLSTQTALPIIGISGGSAVVIPHKLRVPRSPDGASLEQQIVCMFKLMEEYDWGDFVVITS
MLPGYETFVDYVRSYTDTSYFLWRLQDILSLEMSIGTSDVRAKRMLQQIDSQVLVAYCSH
EEAQYLFQVAGEVGLLGPGYIWILPSLALGNTESPSPSSFPIGVIGVITDQWRKSLRQRV
REGVAIVAKGAESFKRHQGFVPEGHSDCNTPVTHINNNTLFRHMLNVTWEHXDLSFNNDG
YLTNPSMVIIALNRDRQWDKVGTLERGILQVRYPVWPRYGSFLEPVSDDRHLTVATLEER
PFVIVENVDPDTGTCVRNTVPCRRQSNRTESLVGHSEPYTKLCCKGFCIDILKKLSRTIK
FSYDLYLVTNGKHGKMISGIWNGMIGEVFYGKADMAIGSLTINEERSEIIDFSVPFVETG
ISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLLSAK
AAGGPTFTIGKSVWLLWXIVFNNSVRIENPKGTTSKIMVLVWAFFAVIFLASYTAHLAAF
MIQEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHAHMVKYNQKG
VEEALNSLKTAKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWK
RPIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSL
LVFSWEHLLYWKLHKELDKSPRMDFLLAISRGIYSCFNGVEEPDLPNLANPDLTANYAQA
NMLKMLRTAKDLVNSAQVETSLDHATKTIEHWGRHGGSLPVHILQQGTMETVPGGFAYVT
ENTHPPPERPLSPQYCTLGVVTSVNQQRGLARPTPLRYTLPARTSSLYDRPLPVSSLICP
HLDLAGGDRLSSCPHPSTGRLYVDPQHLSHPRSPFIPYSELQLPDIYLSSHPPSAVSHPP
HTEPSKRKRKSKSLLSGETGRGGGQRRRRREEKTVCLAELRANHLQENHVSPHMPDSLYP
GKVLCPGEEGCGGSWPLPLEELVLAGRRRLHRRPSFLRATWGSEQIRQPDDTPPTSLDSQ
SHSALPDLFPCVMVDQETPTKLYNPTPFRNNLCYPAASPRQHAYLHIRQDQRKGNSRKKL
RHSHSTHLPTYREVVLGGQEGGGGVGLGVVRRTTSLLSRQYNDYLTSYPGLPLYHSPLNL
QAYSPASSNHPSPGTYRIPSPVCQLLACGGGCRSQRGLLYQDSLYGAYGAYRGAQDPALE
PQREEGSVGLRSEDRPCVTRPWGKVSSLESEV
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttcttccaggacagcctcctcctttcctcctcctcttcatcmtcttcctctcc
tcccttcctcccctcctctcccgtcctctcatcctccatccttctattaatgtagcagta
atgttcagcggctctgcttaccagaatgaggtcaggggtcgtttgagcagagagaacttc
gctgatcttcccctagaggtgaacccggtcactgttctggttaatgacaccaaccctcgc
gccctgctgacgcgtctctgtcaaaccatggccacagagaaactgcatggagtcgtgttc
gaggacgatgtgggatcaggagctggacckcaggtggcagaagtggctcagatcctggac
ttcctgtcractcagacagctctacccatcattggcatcagcggaggatctgccgttgtc
atacctcacaagctgagggttccacgttctccagatggtgcatcactggaacagcagatt
gtctgcatgttcaagttgatggaggagtatgactggggagactttgtagtcatcacaagc
atgttgccgggatacgagacatttgtggactacgtccgctcctacaccgacacttcctac
ttcctgtggaggctgcaggatatcctgtctctggagatgtctatcgggaccagcgacgtc
cgcgccaaacgcatgttacagcagattgattcccaggtactcgtagcctactgctcccat
gaagaggcccagtacctgttccaggtagcaggggaggtgggtctattggggcctggctac
atctggatcctcccctccctcgcgttgggcaacacagagagcccttcacctagcagcttc
cccataggagtgattggcgtcatcaccgaccaatggaggaagagcctgaggcagcgggtc
agagagggagtggccatagtggccaaaggggcggagagtttcaagaggcatcaggggttc
gttcccgagggacacagcgactgcaacacaccagttacacatatcaacaacaacacactg
ttcagacacatgctgaacgtgacatgggagcatnaggacctgtcgtttaataacgatggt
tacctgacaaacccttccatggtcatcatcgctctgaacagagacagacagtgggacaag
gtggggacattagagcggggtatcctccaggtgcgttatccggtgtggcctcgatatggc
agttttctcgagccggtatcagatgatcgccacctgacggtagccactctggaggagagg
cccttcgtcatcgtagagaacgtggaccccgacacgggaacctgtgtacgcaacaccgtg
ccctgccgacgccagtccaaccgcaccgagagtcttgtgggtcactcggagccctacacc
aagctgtgctgtaaggggttctgcatcgacattctgaagaagctgtctcgcaccatcaag
ttctcctacgacctctacctggtcactaacgggaaacatgggaagatgatcagtggcatc
tggaacggcatgatcggagaggtgttctatgggaaagcagacatggccataggttctctc
accataaatgaggagcgttctgaaatcatcgacttctctgtgcccttcgtcgagaccggc
atcagcgtcatggttgcccgtagcaatgggactgtctccccctccgccttcctcgagccc
tatagcccagcggtgtgggtgatgatgtttgtaatgtgcctgaccgtggtagctgtgacc
gtattcgtgtttgagtacttcagtcctgtcggctacaaccgcagcttgctcagcgctaaa
gcggcaggaggtcctaccttcaccatagggaagtcagtgtggttgctttggngcatcgtg
ttcaataactcagtccgcatcgagaaccctaaaggaaccaccagtaagatcatggtgctg
gtgtgggccttcttcgcggtcatcttcctggcttcctacaccgcacacctggctgccttc
atgatccaggagcagtacatagacactgtgtctggactgtctgacaagaagttccagaag
cctcaggagcactaccctccattccggtttgggacggtccctaacggcagcacagagagg
aacatcaggagtaactaccccgacatgcacgcacacatggtcaaatacaaccagaaagga
gtggaggaagccctcaacagccttaagacagcgaagctggatgcttttatctatgatgct
gcggtgttgaactacatggcagggaaggacgagggctgtaagcttgtgactattggctct
gggaaggtgtttgctacaacgggctatggtatcgccctgcagaaagactcccgatggaaa
cgaccaattgacctggccttattgcagttcctgggagacggtgacacccagcgcttggag
acggtctggctgtcaggcatctgtcagaatgagaagaacgaggtgatgagcagtaagctg
gacatagacaacatggccggggtcttctacatgctgctggtggccatggggctcagtctg
ctggtgttctcctgggaacatctactctactggaaacttcacaaggaactagacaagtct
cccaggatggacttcctgctcgccatcagcaggggtatctacagttgcttcaacggggtg
gaggaaccagacctccctaacctggccaacccagacctgacagctaactatgcccaggct
aacatgctcaagatgctacgcactgctaaggacctggttaactccgctcaagtcgagacc
tcactggaccacgccaccaagaccatagaacactggggacgccatggcggcagcctgcca
gtccacattctgcagcaaggcaccatggaaacagtcccgggaggattcgcttatgtcaca
gagaatacacacccaccccccgagcgccccctcagcccacaatactgcacgctgggtgta
gtgacatctgtgaaccagcagagggggctggcgagacccacaccgctacgatacacgctc
ccggctcgtacttcctctctctacgacagaccacttcctgtttctagtctcatttgccct
caccttgacctggctgggggggaccgcctctcttcttgccctcacccctccacaggtagg
ctctatgtggacccccaacacctttcacacccccgctctcccttcatcccctatagtgag
ctccagctcccagacatctacctctcctctcacccaccctctgctgtctcccatcccccc
cacacagagccctccaagaggaagagaaagagcaagagcctcctctcaggggagacagga
agaggaggaggacagaggaggcggcgcagagaggagaagacggtgtgcctggctgaactc
cgggccaaccacctccaggaaaaccacgtctcgccccacatgcctgactccctgtaccca
ggaaaggtgctctgtcctggggaagagggctgcggtggctcctggcctcttcctctggag
gagctcgtcctagcaggcagacggcggctccaccgacggccatctttccttcgagccacc
tggggcagcgagcagattcgccagccggacgatactccgcctacatccctcgatagccaa
tcacattctgctttaccagacttatttccctgcgtcatggtcgaccaagaaactcccact
aaactctacaaccccaccccgttccggaacaacctatgctatcctgccgcctcaccccgc
caacatgcctatcttcatataaggcaggaccagaggaaaggaaactcacgtaagaagctg
cggcactcacactccacccacctgcccacatacagggaggtcgtgctggggggccaggaa
gggggaggtggggtaggcctgggggtggtccggagaaccaccagcctgctcagcagacag
tacaacgactatctaacctcctaccctgggctgcctctataccacagccccctcaacctc
caggcatattccccggcgtccagcaaccaccccagccccggtacctaccgtatccccagc
cctgtatgccagctcctggcctgtggagggggctgtcgaagtcagagggggttgttgtac
caggacagtctgtatggagcctatggagcctatcgaggggcccaggatccggccttagag
ccccagagagaagagggctcggtagggttgaggtctgaggacagaccctgtgtgactcgg
ccctggggaaaagtctctagtctggagtcagaggtctga
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