Salvelinus sp. IW2-2015 (Arctic char): 111977737
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Entry
111977737 CDS
T05762
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111977737
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111977737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
111977737
NCBI-ProteinID:
XP_023863081
LinkDB
All DBs
Position
LG18:complement(28308614..28372000)
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AA seq
1857 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCAEDPEDSYSDRLSFYRFDISRLLKHGASLLGSA
GAEFEVEDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYISTP
IGPKGQGGKGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSKDM
DPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDTVPDNSSLLDETQEWPLESFCE
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMARQHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVRHG
GLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLPNK
VPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLGILSEQLYYDEI
AIPFTRMQNECKQLISLLADAQIDVRDRLNCSVFTIDQASELVTTIFTESTVGLNMKSKQ
FQPLDGKRQQTQSTVDETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQET
AKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTPKTPTTELPPGSTITT
DTDENKKNSLVQRRGAEFSLMTVARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDWKL
QMERGDAAAQXLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCV
GVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLVVP
VLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLLDS
RKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHY
LRAQEYAKTKAADRTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARLQ
HQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVI
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTIST
ASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQ
HSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPQLPTV
TYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR
DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMGTD
QLLNLFTLDKDGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYDTEYNLDSFMHTLH
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaaggctgctgctcaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggttttgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggaacccatcaccc
aagcccaaagaagagtcatgtgcggaggacccggaggactcctactctgaccgtttgagt
ttctaccgtttcgacatctcccgcctcctcaaacatggtgcttctctactcggttctgcc
ggcgctgagtttgaggtcgaggatgacaagtctggtgaagtggaccctaaggagcgtctc
acccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatcggc
atggacacgatggagctgttcaatgatgaggacctggacacccagtacatctccacgccc
attggccctaagggacagggagggaagggctctggaccctgctccagctcccacaaccac
gtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaagacatg
gatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcgcaggaaa
actaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgatactgtt
ccagacaactccagcctcttagacgagacccaggagtggcccctggagagcttctgtgaa
gagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggcacaggc
ctcagggagatcctcaagtctcaaggtgctggaggtgggaagctggtggaatgcactgca
gaacagatggcgcggcagcaccaggagtggctggaggacgtggttatcaggctgctctgt
gtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccggtcaga
gagacttgtgcccagacactgggtgtggccttgcgccacatgaatgacagcggcgttgcc
atgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccggcacgga
ggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgctatgctt
ccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtcagagcg
gtggcagccgcggccctcatccctgtggtggacggctttgtacagctactccccaacaag
gtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctgacggcc
tccacaaacagcatcatgaccctactgtcctcgctgctcacctacccccaggtccgacag
tgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattccttagacac
accatatcatcagtcaggcgagccgcattagagaccctctttaccttactatccaaagct
gaccagagctgcgcgctatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcttgcatcctggagagcaatcaggagatcctggacctcattcaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctggatgggc
gcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatgctgctg
gaagtcaaggctcgctgcaaggagaaggccggaggtaagcctcgccagggagccttggtt
caggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgaggaccca
attacgcgggactatgtggtgacacgggctcgcctcatggctgcaaaactgttgggggcc
ttgtgtcggtgtatgtgcgacccgcaggtcaactcatcctcacaggacatccgaccggct
gagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcagcgcatc
gctgtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtggtgtca
gccttggtccagcctcgactcttaggcatcctgtcagagcagctgtactacgacgagatc
gcaattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcagtgttttcaccatcgaccaggccagc
gaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacatgaagtccaaacag
tttcagccactggatggcaagcgtcagcagacccagtccacagtggacgagaccagtgtg
gagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgccgtggtcaacttg
caggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggctaagcgg
gaggagaataccctggtgcagggctatgccgcctccttcattgcgaagctgctgcagcag
tgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttcatcggtc
tgcgtggaccccctgctcacgccctcctcggcrtgtccggtgtccacgactcaggagact
gctaaagctggaatgtcggaaaaagaatgcatgcaccacgtggtcaataagaccaagggc
atcatcaccctgtaccgccaccagagggcagcatttgccatcaccagcaaaaggggcccc
acccccaaaacccccaagacacccaccactgaactgccccccggcagcaccatcaccaca
gacaccgatgagaataaaaaaaacagtctcgtccagagaagaggcgccgagttctctctg
atgacggttgccaggcactttggccaggagctgacagggtcactgccctacctgtgggag
tccatggtgggacctctgagggctgtggtggaggacaatgaaggcatagattggaagctc
cagatggagaggggggatgctgcggcccaggawctggtcaactcactgcaggtcctagag
gtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctgccccac
ctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgctgcgtg
ggcgtgctcagtaagatcgctaccatggagaccatgcacctgttcctggagcgtgtgctt
ccatggctagggtgcatcgaggacagcactaagcaggagggggccatcgaggccatggcc
tgtgtgatggagcagttggatgtggacatcgtgccatacattgtgctgctggtggtgccg
gtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttc
gccaccctcatccgcttgctacccctggaggctggtatcccggaccctcccaccatgtcg
gatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgcttgacagc
aggaagctggagaactacaagatccctgtgcccatccaggccgagctccgcaagtatcag
caggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtattctctgt
gatgacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccactac
ctcagggcacaggagtatgccaaaaccaaggcggcagaccgcacccccctgccctctctg
gtggtgtgcccccccaccctgacaggtcactgggtggacgaggtgggcaagttctgcacc
aaagagtacctgaacccactgcactacacgggaccccctacggagcgagcacgtttacag
catcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaacgacatt
gacttttttaggaatgtaaaattcaattattgtatcctcgacgagggccatgtgatcaag
aacgggaagaccaagctctcaaaagccataaagcagttggccgccaacttccgagttatc
ctatcaggaacgcccatccagaataatgttctggagctgtggtcactctttgacttcctc
atgcccggcttcctgggcacagaacgacagtttgctgcacgctacggcaaacccatcctg
gccagccgtgatgccaagagctcatcgcgtgagcaggaggccggggtgctggccatggag
gcgctgcatcgccaagttctgcccttcctcttgaggaggatgaaaaaggacgtgctgcag
gacctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcag
ctgtatgaggactttgccaagtcccgggccaaggtcggtgtggaggacaccatctctaca
gcctccacccaggaggaggagaaacccaagctgaaggccacgggccacgtgttccaggct
ctgcagtacttgaggaagctgtgtaaccacccaggcctggtgctgctgccacagcaccct
gagtacaagcgcatcacagaccagctggcagcacaacactctagccttcgagacatccag
cattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggcagcagc
ggctcagcggagggcacagaggcggtggttgcccaacacagagtattgatcttctgtcag
ctgaaaagcatgctggacatcgtggagcacgacctgctcaagccgcagctgcccaccgtc
acctacctgcgacttgacggcagcgtgcaggcaagcctgcgccacgccatcgtctccagg
ttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggtggtctgggt
ctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaaccccatgaga
gacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaatgtgtat
cgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttcaagatg
aacatcgccaacgcggtcatcagccaggagaacgccagcctgcagagtatgggcaccgac
cagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgagtcgtct
tccggagggaaagcctccattaagaacgtgctggacggtctgggggacctgtgggatcag
cagcagtatgacacagagtacaacctggacagcttcatgcacacgctccactag
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