Salvelinus sp. IW2-2015 (Arctic char): 111977912
Help
Entry
111977912 CDS
T05762
Name
(RefSeq) LIM domain-binding protein 3
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111977912
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
salp04990
]
111977912
Domain-containing proteins not elsewhere classified [BR:
salp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
111977912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
Motif
Other DBs
NCBI-GeneID:
111977912
NCBI-ProteinID:
XP_023863460
LinkDB
All DBs
Position
LG18:complement(32999937..33091159)
Genome browser
AA seq
863 aa
AA seq
DB search
MSSYNISLSGPAPWGFRLQGGKDFNMPLTISRITPGSKAQQGNLVQGDIIVAIDGVSTEG
MTHLEAQNKIKCASFNLALTMQKYVPRTRTPGSKAQQGNLVQGDIIVAIDGVSTEGMTHL
EAQNKIKCASFNLALTMQKSKRPALQSATPRIDSPMQQIPHQKVIFNTPANNDYIPNFNP
NALKDTALSTHKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQSQSKGHEGGSL
PVKDAQVDSASPVYQAVIKTADRDMELNDWARSSSQVQSKSFRLLAHITGTEFMQDPDVE
HLRKSREKFDTEFKGPRFAKLKNWHNGLSAQILNVPEKTLLYSVLCSEQPPPATQTQPVA
PEAPTVPSGAPRHLTHAASHISSALITQSRNKVYKQGPPPTSALEALSITPVFRTSTLPK
RKRTLPSGKPKHLSYSLQQSASGYSSQYKSSVSSQYGQAPPMQQAPPMYQGQSMYQGQSM
QQGPPMYQGPPMQQGPPMQQGPPMYQGPPMHQAPHMQQPPMQQPPHMQQPPHMQQPPHMQ
QPPHMQQPPHMQQSSIQIPVGPPPPKVVSTACIVPAPAPVPPQAAAPEPPSSRPPWITDD
SFANKFDPSKTTSTSMKVPALPQSAPPAPAYIPHPGSAHTPHSAPSPAYNPSPAPYNPTP
APFNPVARGVAQRAERFAANSNRAPLCGACNNMVRGPFLVALGRSWHPEEFNCHYCHTSL
ADCSFVEEQNAVYCENCYGEFFAPTCARCNTKIMGEVMHALRQTWHTTCFVCAACGKAFG
NSLFHMEDGEPYCEKDYISLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCNLNL
EGQPFYSKKDKPLCKKHAHAINV
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctacaacatttctctgagtgggccagccccgtggggcttccgattgcaggga
gggaaagacttcaacatgcccctgaccatctccaggatcacccctgggagcaaggcacag
caaggcaacctggtccagggtgacatcatcgtggccatcgacggagtcagcactgagggt
atgacccacctggaggcccagaacaagatcaagtgtgccagctttaacctggccctcacc
atgcagaagtatgtaccacgcacacgcacacctgggagcaaggcacagcaaggcaacctg
gtccagggtgacatcatcgtggccatcgacggagtcagcactgagggtatgacccacctg
gaggcccagaacaagatcaagtgtgccagctttaacctggccctcaccatgcagaagtca
aagcgcccagctttgcaaagtgccaccccaagaatcgactctcccatgcaacagatccct
caccagaaggttattttcaacacgcctgccaacaacgactacatccccaacttcaacccc
aatgcgctgaaggacactgccctgtccacccacaagcccatcgaggtgaagggtcctggg
ggcaaggccaccatcatccatgcccagtacaacacccccattagcatgtactcccaggac
gccatcatggacgccatcgccggacagtcccagtccaagggccacgagggcggttcactc
cctgtaaaagacgctcaggtagacagtgcctccccagtgtatcaggctgtcatcaagact
gcagacagggacatggagttgaatgactgggcccgcagctcctcccaggtgcagtccaag
tccttccgcctcctcgcccacatcacgggaacggagttcatgcaagacccagacgtggaa
catctgaggaaatcaagggaaaagtttgacaccgaatttaaaggcccacgttttgccaaa
ttgaaaaattggcacaacggcctgtctgctcaaatccttaacgtgccagaaaaaaccctg
ctctactctgtcctctgcagcgagcagccacccccagccacccagacacagccagtggcc
cctgaggcccctacagtcccctctggggcacctcgccacctgacgcatgcagcctcccat
atctcgtctgctttgattacacagtctagaaacaaggtttataagcaagggccaccgccc
acctctgcgctggaggctctgtcaatcaccccagtgttccgaaccagcactttgcccaaa
cgaaagcgcaccctgccctctgggaaacccaagcacctgagctacagcctgcaacagtct
gcctctggttacagctcccagtacaaatcctcagtctccagccaatatggccaggctccc
cccatgcaacaagcccctcccatgtaccaggggcaatccatgtaccaggggcaatccatg
cagcaggggcctcccatgtaccaagggcctcccatgcagcagggacctcccatgcagcag
ggacctcccatgtaccaggggccccccatgcaccaggccccgcatatgcagcaacctccc
atgcagcagcctccacacatgcagcagcctcctcacatgcagcagcctcctcacatgcag
cagcctcctcacatgcagcagcctcctcacatgcagcaaagctccatccagatccctgtg
ggccctcccccacccaaggtggtcagcaccgcctgcatcgtgccagctcctgcccctgtt
ccaccccaagccgccgcccctgaacccccctccagcaggcccccctggatcactgacgac
tcttttgccaacaagtttgaccccagcaagaccaccagcaccagcatgaaagtgcctgct
ctacctcagagtgccccaccagcaccggcctatatcccacaccctggctctgcccacacc
cctcactctgccccaagccctgcctataacccaagccctgccccctacaaccccacccct
gcccctttcaatcctgttgcccggggcgtggcccaaagggcggagcgcttcgctgccaac
agcaacagagcacccctctgtggagcctgcaacaacatggtcaggggacccttcctggtg
gccctgggtcgatcctggcacccagaggagttcaactgtcactactgccacacatcgctg
gcagactgcagctttgtggaggagcagaacgcagtgtactgtgagaactgctacggcgag
ttctttgcccccacctgtgcccgctgcaacaccaagatcatgggggaggtgatgcatgct
ctgcggcagacatggcacaccacctgctttgtgtgtgctgcctgtggcaaggcctttgga
aatagcctcttccacatggaggacggggagccctactgcgagaaagattacatttcactc
ttcagcaccaagtgccatggctgtgacttcccagtagaagctggagacaagtttattgaa
gcactgggtcatacctggcacgacacctgctttgtctgtgcggtgtgcaatttgaacctg
gagggccagcccttctactccaagaaggacaagcccctgtgcaagaagcacgctcacgcc
atcaacgtgtag
DBGET
integrated database retrieval system