KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111978703
Entry
111978703         CDS       T05762                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:salp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:salp03036]
    111978703
   03400 DNA repair and recombination proteins [BR:salp03400]
    111978703
Chromosome and associated proteins [BR:salp03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    111978703
DNA repair and recombination proteins [BR:salp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     111978703
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N HEAT_EZ Sec7-like_HUS Tipalpha
Other DBs
NCBI-GeneID: 111978703
NCBI-ProteinID: XP_023864683
LinkDB
Position
LG18:complement(7112389..7130019)
AA seq 1026 aa
MAAGSALLVGLVEEFVSGQQDSKAADTATGLKAGQFTILQLVEALGLHLASSQPQTRARG
VQLLSNVLQQCHGDLTEREVEVLLAFYENRLKDHYVVTPHVLKGLKALTKCSVLPPGSAV
SILKSLFQDVHVQSLMLVERSCVYNILTQLMESRESELKGLGADFVFGFVQSVDGERDPR
NLLLAFQIAGKIIHGGYDLGKFTEELFEVTSCYFPIDFSPPPNDPHGITQEELILALRAV
LTGTPRFAEFLLPLIIEKLDSDVQSAKVDSLQTLTACASVYEHKELAEFLPGLWASLRRE
VFQTASERVESAGLAALGALTACISRSVLNSDSEDYLNVFLDLVLKDCQHHLCEPDLKLV
WPSAKLLQATSTASYRASHRVAAAIMPSLIEQYNSRTQCAQRRTLLEVLQGFVQPVKSSE
EDESVLLDFRQSLCSIVFSALAENSAGLQITSLRVLTALSQQTVLLLESDVELAVDHLTR
LILEEEDAKVSLAVVECAGALACLHPLAFISKMVPRLKGEIFSESMAQGDSATPSQEHSQ
QAVRQRCLTALAAVSSRPSVVQESTPVLLQVLTSSHTGTGSFSLEEVISVCHNLQRIAEH
AQDTEETGRVFHDIIIPRLLGLALQAAMQGPSDHQSPLVEESVLSAMVPVISTTCARLQS
QLAGQTASRVVSLFLDGDMSFLPENAFPSQIQLLKKQAGDSWSQSQMVCLLMGCVCSLPR
SVEVPQMDRLLLELEELSCTCDHPLSYTSAAKCYAGLVNKRPAGEALDSLIDRMLKRIST
ELDCASSSVRTQAFTLLLWVAKALLLRYHPLSTALTDKLFSLLSDSELGSLAADGFSLLM
SDSPDILNRGCNADIRIMYRQRFFTENSAKLVQGFNSAAQEKKSGYLKALSHIVNNLPRQ
VQLTELPALLPLLLEALSCPDQAVQLSTLSCLQPVLMDPPSALITQLEALVGRTLTLTTS
PAMKVRIASLRCIHALSRFPEHEIMPFRARVLRGLAVPLDDLKRMVRSEAVVARNEWFLL
GSPGGR
NT seq 3081 nt   +upstreamnt  +downstreamnt
atggctgcgggtagtgccttgctagtgggcttggtagaagaatttgtttcgggacaacag
gacagcaaggccgcagacaccgcaacaggactcaaggctggacagtttacaatactacag
ttggttgaagcgttgggcttgcatctggccagctcccaaccccagacccgagcccgtggt
gtccagctcctctccaatgtcctacagcagtgccatggagaccttacagagagagaagtg
gaagtccttctagcgttttatgagaacagactcaaggaccactatgtcgtcacaccacat
gtcttaaaggggttgaaagcgctgacaaaatgctcagtgttgccgcctgggtctgcagtg
tccattctgaaatcactcttccaggacgttcatgtgcagtccctgatgctggtggagcgg
tcatgtgtttacaacatcctaacccagcttatggaatccagagagtcagagctgaagggc
ctgggtgcagactttgtttttgggtttgtccagtcagtggatggggagagggacccacgc
aatcttctcctggccttccagatcgctgggaaaatcatccacggaggctatgatctgggt
aaattcacagaggagctgtttgaagttacatcctgctatttccccatagacttcagcccg
ccacccaatgacccccacggcatcacccaggaagagctcatcctcgccctgagggccgtg
ctcactggaacaccacgctttgcagagttcctgctgccgctgatcattgagaagctggac
tccgatgttcagagtgccaaggtggactccctgcagaccctgactgcctgtgcttctgtg
tatgaacataaagagctagccgaattcctaccaggcctttgggcctcgctgcgcagggag
gtgttccagacagccagtgagagggtggagtccgctggtctagctgccctcggtgccctg
acagcctgcatctcccgctccgtcctcaactctgactctgaagactacctcaatgtcttc
ctcgacttggtcctcaaagactgtcagcaccacctgtgtgagccggacctgaagctggtg
tggcccagcgccaagctgctgcaggccacctctaccgcctcctacagggcgagccacaga
gttgcagccgccatcatgccgtccctcatagaacaatacaacagccgaacacaatgtgct
cagcggcgcaccctactggaggtgttacagggcttcgtccagccagtgaagtcttcagag
gaggatgagagtgtgctgttggacttcaggcagtctctttgcagtatagtgttctctgcc
ctggctgagaacagtgctgggctccagatcacatcactgcgtgtgctcactgccctgagc
caacagacagtcctgctgttagagtcagatgtggagctggccgttgaccacctcaccagg
ctcatcctggaggaggaagatgctaaagtcagcctggctgtggttgagtgtgcaggggct
ctggcttgtctgcaccctctagccttcatctctaagatggttccacggctgaagggggag
atcttctcagagtccatggcacaaggtgacagcgccacgccgtcccaggaacattcccag
caggccgtacgtcagcggtgtttgacggcgctggctgcggtgtcgtcccggcccagtgtg
gttcaggagagcacacctgtcctgctacaggttctcacctcctcacacactggcactggc
tcattttcattggaggaggtgatctctgtgtgccacaatctgcagaggatagcagagcat
gcccaggacactgaagagaccggccgcgtcttccatgacatcatcattccgcgcctgctc
ggactggccttgcaggcagctatgcaagggccctcagaccatcagagtcctttagtggag
gagtctgtcctatccgccatggtaccagtcatcagcaccacctgtgcccgactacagtcc
caactggcgggccaaacagcctcgcgggtggtgtccctcttcctggatggggacatgtcc
ttcctgccagagaatgccttcccctcccagatccagctcctcaagaagcaggcaggtgac
tcctggagccagtcccagatggtgtgtcttctcatgggctgtgtgtgttcgctgccacgg
agtgtggaggttccacagatggataggctactgttagaactggaggagctgagctgtacc
tgtgaccatcccctctcctacacctcagccgccaagtgctacgctgggctggtcaacaag
aggcctgcaggagaagccctggactctctgatagacaggatgttgaagaggatctccact
gagctggactgtgcgtcctcctcggtccgaacgcaggcgttcacgctgctgctctgggtg
gcmaaggctctcctcctccgctaccaccctctgtccacagccctgactgacaagcttttc
tccctgctcagtgactcagaactgggttcgttagctgccgatggattctctctcttgatg
agcgactcgccggacatcctcaaccgcggttgcaacgccgacatacgcatcatgtaccgc
cagcgcttcttcaccgagaactcggccaagctggtccagggctttaactctgcagcccaa
gagaagaagtctggctacctgaaggcactgtctcacatagtgaacaacctacccagacag
gttcagctcactgagctaccagcgctcctgcccctcctgctagaggccctgtcctgtcca
gaccaggcggtgcagctgtccaccctgtcctgcctgcaacctgtcctcatggaccccccc
tccgccctcatcactcagctggaggcgctagtaggccgcaccctcaccctcaccacaagc
cctgctatgaaagtgcggatagcctctctgcgctgtatccatgccctctcccgctttcca
gaacatgagatcatgcctttccgtgcgagggtgctgcgtggcctggctgtgcccctggac
gacctcaagaggatggtgaggagcgaggcggtggtggcacgcaatgaatggttcctactg
gggagtccagggggaaggtga

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