Salvelinus sp. IW2-2015 (Arctic char): 111979282
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Entry
111979282 CDS
T05762
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
111979282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111979282
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111979282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
RcpB
Chromo_MIT1
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
111979282
NCBI-ProteinID:
XP_023865476
LinkDB
All DBs
Position
LG19:9923827..9949299
Genome browser
AA seq
2590 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDALPGDAFTQGSSDPVEEALKLALGQIEPPYEPTPALSIPVAX
PTIPDPVPVQQLAPVPFALPQTVSIASTVPQTTLSVASNTSRAATVLLGSPLTVNSSAGT
TQQITTQQFTTQQLTQIAQQLTPQQLAAITQQAGGQGGSKIVILKGPGGHAQVLQTVPGT
GSQAGKVTFARVLSGTQLRPGMQILSGGTVLNQASPGQGQVKVGTGIQRLVQSPNRPLKQ
VQLISMPQGQTQTVQMQIPQAQLAQAQQIQLQPQTQVQLQSTMQTQVTATATGTTSVRPQ
GVTLTTVPQQGEAKRITLVLQQPHGGTTQGGAVTVGGSGQLQQGQQQRLVLGNLPGKLVL
QGGQLAALTQARAGQTGAQPKVLTIQLQVQQQPNQQGVPKFQLVSGGQGSSPQVVQISQG
QGGQRLAMPLKLLLQPQMSSTSTAGGTVSVVKVINTSAAGSAPSTTTTMASTGIRLAKAQ
EPVRRVETLGKQEKANRIVAEAIARAKARGERNIPRVLNQDELPAGQKAADKGAAATTTG
TPGAKKKGGGGGSKKKSPPGTGGKGIACAEKKGKAKAAGGAAVGTPVGVAGTSGSKSKSK
AKINTITLVGGKKRKRNASSDHSDGELSPASPSKALEEDMLAKRRSNRQVKRKKYTEDLD
IKITDDEDEPEEDVDVTTTAAVASITGGAAGQLMGDQLKQELQLDGDGLSSMQFFVENPN
EEDAAIVDKVLSMRLTKKEVSPGHYINAEEFFVKYKNYSYMHCEWATLEQLERDKRIHQK
LKRFKIKHAQMRLLLQEEEEAFNPDYVEVDRILDESNSVDKDNGEPVVYYLVKWCSLPYE
DATWELREDVDEDKVEEFRKIQDRQPQLKRTPRPQAAAWKKLEEFREYKSGNVLREYQLE
GVNWLLFNWYNRQNCILADEMGLGKTIQSISLLSEVSGAGVQGPFLVIAPLSTITNWERE
FATWTDMNAIVYHGSLASRQMIQQYEMYCKDDKDHLIPGAYKFDALITTFEMILSDCPEL
REISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPA
QFSSEFEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQ
KKYYRAILERNFSFLSMGATSNSNVPNLLNTMMELRKCCNHPYLITGAEESIVAELREVY
DPMVPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLY
ERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQND
LQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESNVNGQ
IQQFSKKEIEDLLRKGAYAAIMDEEDEGSKFCEEDIDQILQRRATTITIESEGKGSTFSK
ASFVATENRTDIALDDPEFWQKWAKRADIDFDSMNRKNTLVIDTPRVRKQTRQFATLRGE
GGEISDPDSDEEYPPANSRQSRSSRRSERHTGNGYGRTDCFRVEKHLLVYGWGRWRDILS
HARCKRRLGERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREPHTLLNHSGL
SIPVPRGRKGKRVKAQSSFDIQKVEWIRKYNPDSLLLDDSYRKHLKHQCNKVLLRVRMLY
YLRQEVIGEHADSVLRGADARDIDIWMPEMEQQEVPSGWWDTEADRSLLVGVFKHGYEMY
TTMRADDCLCFLERAGRPDDQAIDAEQHSADAELGDGGDDDKYSEDPEFKPALRHTKDLY
EEADSMNMGDDICVDDKPGPVKTKAPPSGLSGACEWPTSSSLTARLRRLITAYQRSYKRE
QLKVEAAEKGDRKRRRCEQASKLKEIARQERQQRYQLLPSAINSASICVLNLRWTRREEC
DFYRVVSTFGVERIKEPNAREGEDAKLEWARFRTFARLDKKTDESLSRYFRCFMAMCRRV
CNLRPARGEDPSELGQSMAPITEERASRTLYRISLLRRLRERVLPHPSMEESLLLAPLSS
ELPVWWSTPAHDRELMLGAALHGVSRTELSVFSDPQFSFSQAHHDYLEIQQNQPAPATPL
RQPQAEEGSAVKEEEGLNGESGLLGASEALGHSDTQTTPLSRPDGKGQARTALGWKKSRG
RGPRSGGKKGGRSGGEGGTSDLDSDSDSGSSTSSRRSESSDDSGDSDAERERVALKMEED
GENSMLSMTPSQDGAPPESLTDPFRVDWPKDRVLINRLDSLCTLVLSGQWPTGRRYASDA
QLNPGSDDLGAGDELSFARLMRKSHITPGGEGADGEESEFTVKLLKEEGLKLTFSKHALM
SNGSGGEGSGRRKRRDQELSDPDGTVAVVDAMTGTVLSGERAPRRRDLPNWLKENPEYEV
EGDMLELLVNRSKRKKKRTEKAVALSGSEKINIIDMRTGKKVGAAHGPMLQDLREFLEEN
PDCAVAPEWAETVRCSGFLPDSLFHRLLSAHSVIPKRDRHHRHHHAPQPDPLEDPLLGGG
EEETLVSDGAYMMEDEDLEDSSFLTQAFDVKMEGGDSLSQGGYESSDREALLDDVIMAQK
DSDSSSSSED
NT seq
7773 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgatgacacgccgctgttcaacctggatgctctg
ccaggcgatgccttcacccagggttcctcagaccctgtggaggaggctctgaagctggct
ctggggcagattgaacccccctatgaacccaccccagctctcagcataccagtggcarct
ccaaccatcccagacccggtccctgtgcagcagctggccccagtcccattcgccctccct
cagactgtttcaatcgcttcaacagtacctcagacaacactctctgtagccagtaacact
agtcgggctgccacagtcctgctgggctcacctctgactgtcaatagctctgctggcacc
acacaacagatcacaacacaacaattcaccacacagcagctcacacagatcgcacagcag
cttactcctcagcagctagctgccatcacccagcaggccggagggcagggaggctccaag
attgtcatcctgaagggacctggggggcatgcacaggtgctgcagactgttcctgggaca
ggctcccaagcggggaaggtcacctttgccagggtactgtctggaacccaacttaggcct
ggcatgcagatactgtctggaggaacggtcctgaaccaagcgtctcctgggcagggacag
gtgaaggtggggactgggatacagaggctagttcagtcgcccaacagacccctgaagcag
gtgcagttgatctccatgccccagggccagacgcaaactgtccagatgcaaataccgcag
gcccagcttgcccaagcgcagcaaatccagctacagccccagacacaggtgcagctacag
tctaccatgcaaacacaggttactgccactgctacaggcaccacttcagtccgaccacaa
ggggttaccctcactacagtgccacagcagggtgaagctaagaggatcaccctggtgctg
cagcagccccatggtggcacgacccaggggggtgctgtgacggtgggtgggtcaggtcag
ctgcagcagggccagcagcagaggctggtgttgggtaacctcccagggaagctggtcctc
caagggggtcagctggctgctctcacccaggccagggcagggcagacgggggcgcagcct
aaagtacttaccatccagctgcaagtgcagcagcaacccaaccaacagggggtacccaag
tttcagctggtgtctggagggcaaggtagcagcccacaggtggttcagatctcccagggg
caaggtggacagagactggccatgcccctcaaactgctgctgcaaccacagatgagctcc
acctccacagcaggcggtactgtctccgtagtgaaggtcatcaacacctcggctgccggc
tctgccccttccaccaccaccaccatggcatcaacagggatacggctagccaaggcccag
gagcctgtacggcgtgtggagaccctgggcaagcaggagaaggccaaccgcattgtggcc
gaggctatcgccagagcaaaggcccggggagagaggaacattccacgagttctcaaccag
gacgaactgcctgctggacagaaggctgctgacaaaggggctgctgcgacgaccactggc
acacctggagctaaaaagaaggggggaggaggcgggagtaagaagaaaagcccaccaggg
acaggggggaagggcatagcttgtgctgagaagaaaggcaaggccaaggcagcaggtgga
gctgctgtagggacacctgtaggggtggctggaaccagcggcagcaaaagcaaaagcaag
gcaaagatcaatacratcactctagtggggggtaagaagaggaagaggaatgcctcctca
gaccactctgatggggarttgagccctgcctctccctctaaggccctggaggaggacatg
ttagcgaagaggcgctctaaccgtcaggtgaagaggaagaagtacacggaggacttggac
atcaaaatcactgacgacgaggatgagccggaggaggacgtggacgtaaccacgacggca
gcggtggcgtccattaccggaggggcagcggggcagctgatgggagaccagctcaaacag
gagctgcagttggacggggacggcctttccagcatgcagttctttgtggaaaaccccaac
gaggaagatgcagcaattgtagacaaagtcttgtccatgaggctaactaaaaaggaggtg
tctccaggacattatataaatgctgaggaattctttgtcaaatataagaactactcctac
atgcactgtgagtgggccactctggagcagctggagagagacaagaggatccatcagaag
ctgaagagattcaagatcaaacacgcacaaatgagactcctcttacaggaggaggaggag
gccttcaacccagactatgtggaggtggaccgtatcttggatgaatccaacagtgtggac
aaggacaatggagagccggtggtgtattacttggtgaagtggtgctctctgccctatgaa
gacgccacctgggagctgagggaggacgtggatgaggacaaggtggaggagtttaggaag
atccaggaccgccaacctcagctcaagagaacgccccgaccccaagcggctgcatggaag
aagctggaggaattcagagagtacaagagtgggaacgtacttcgagaataccagctagag
ggagtcaactggctgctcttcaactggtacaacaggcagaactgtatcctggccgatgag
atgggtctagggaagaccatccagtctatctctctgctgtctgaggtgtctggtgccggg
gtccagggccccttcctggtcatcgcccccctctccaccatcaccaactgggagagggag
ttcgccacctggaccgacatgaatgccatcgtctaccatggcagcctggccagcaggcag
atgatccagcagtatgagatgtactgcaaggacgacaaggaccatctgatcccaggggca
tataartttgatgccctgatcaccacgtttgagatgattctgtccgactgccctgagctg
agggagatctcctggcgctgtgtgatcattgacgaagcccaccgcctcaagaaccgcaac
tgcaagctgctggacagcctcaagatgctggacctggagcataaggtgcttctgacaggc
actcccctccagaacacagtggaggagctcttcagtctgctgcactttcttgagccagct
cagttctcctcagagttcgagttcttacgtgactttggagacctcaaaacagaggagcag
gtccagaagctccaagctattctgaagcctatgatgctgcgcagactcaaagaggatgtg
gagaagaacttggcaccaaaacaggagaccatcattgaggtggagctgacagatgtgcag
aagaaatactaccgggccatcctagaaaggaactttagtttcctcagcatgggggcaacc
agcaacagcaaygtccccaatctgctcaataccatgatggagctacgcaagtgctgcaac
cacccttatctcatcacaggggcggaggagtctattgtggctgagctgagggaggtgtac
gaccccatggtcccagacttccacctgcaggccctggtgagatctgcaggcaagctggtc
ctgctggacaaactgctgcctcgyctgaaggccgggggacacaaggtgctcatcttctcc
cagatggtgcgctgcctggacatcctggaggactacctcatcaacaagagatacttgtac
gagcgtattgatggcagagtgagagggaacctgcgtcaggcagccattgatcgcttcagc
aaaccagactcggaccgtttcgtcttcctgttgtgtacccgggctggaggcctgggcatc
aacctgactgctgccgacacctgcgtcatctttgactcagactggaaccctcagaatgat
ctgcaggctcaggcgcggtgtcaccgtatcggccagtccaaggcggtgaaggtgtaccgt
ctgatcaccaggaactcctatgagagggagatgttggacaaggctagcctcaaactgggt
ctggaccgggctgtactgcagagcatgagtggcaacaaggagagcaacgtcaacggacaa
atccagcagttctctaagaaggagattgaggacctcctgaggaagggggcgtacgctgcc
atcatggacgaggaggacgagggctccaagttctgcgaggaggacattgaccagatcctc
cagaggagagccaccaccatcaccatcgagagcgagggcaagggctccaccttctccaag
gccagcttcgtggccaccgaaaacaggaccgacatcgccctggacgaccctgagttctgg
cagaagtgggccaagagggcagacatagactttgattccatgaataggaagaacactctg
gtgatcgacacacccagagtaaggaagcagacccgtcagttcgctaccctgaggggcgag
ggcggggagatctctgaccccgacagcgacgaggagtacccacccgccaattcccggcag
tcccggtcctcaaggcgctccgagcgccacaccggaaatggctacggccgcaccgactgc
ttccgtgtggagaaacaccttcttgtttatgggtgggggcgctggcgggacatcctgtct
catgcacgctgtaagcggcgcctcggggagcgtgacgtggagaccatctgcagggtcatc
cttgtcttctgcctgctgcattaccgtggcgacgagaacatcaagagtttcatctgggag
ctcatcacccccccagagaacggccgggaaccacacacactcctcaaccactctggtctg
tccatccctgttcctcggggcaggaaggggaagagggtgaaggcccagagctcatttgac
attcagaaggtggagtggatccgcaagtacaaccccgactccctgcttctggacgacagc
taccgcaaacatctcaagcaccagtgcaacaaggtgttgctgagagtgcgtatgctgtac
tacctgagacaggaagtcattggagaacatgccgattctgtgctgagaggagccgatgcc
agggatattgacatctggatgcctgagatggagcagcaggaggtgccatcaggctggtgg
gatacagaggcagaccgctccctcctcgtcggtgtcttcaaacacgggtatgagatgtac
accaccatgcgtgccgacgactgtctctgtttcctggagagagctggtcgccctgacgac
caggccattgatgcggagcagcactctgcagacgcggagctgggagacggaggagacgat
gacaagtattctgaagacccagagttcaaacctgcgttaaggcacaccaaagacctgtac
gaggaggctgactccatgaacatgggtgacgatatctgtgtcgatgacaagccggggccc
gttaaaaccaaggcaccgccttctggcctgtcaggagcctgtgagtggccgaccagctcg
tcacttaccgcgcggctccggcgtctgatcaccgcataccagcgcagctacaagagagag
cagctgaaggtggaggcagcagagaagggcgaccgcaagcgcaggaggtgtgagcaggcc
agtaagctgaaggagattgcacgccaggaacgccaacagaggtaccaactactaccctca
gctattaactctgcaagcatatgtgtcctgaatctgaggtggacccgtagagaggagtgt
gatttctaccgtgtggtgtccacgtttggtgtcgagcggataaaggagccaaacgcccga
gagggggaggatgctaaactggaatgggcccgcttccggaccttcgcccgtctggacaag
aagacggacgagagtctgagtcgctacttccgctgcttcatggccatgtgccggagggtg
tgcaacctgcggcccgcccgcggagaagacccatcagagttggggcagtctatggccccc
atcaccgaggagcgggcctctcgcaccctgtaccgcatcagcctgctgcgccgtcttcgt
gagcgtgtcctgccccacccctccatggaggagagcctgctgctggccccactcagctcc
gagcttcccgtctggtggagcactccggcccacgaccgggaactcatgctgggcgccgcc
ctccacggcgtcagccgcaccgagctttcagtcttctctgacccgcagttctccttcagc
caagcccaccacgactacctcgagatccagcagaaccagcccgcccctgccactcccctc
cgccaaccacaggcagaggagggctccgccgtcaaggaggaggagggactgaacggggag
tccggcctccttggagcttctgaggctctcggccactccgatacccagaccacacccctc
tctcgccctgatgggaagggacaggcccggaccgccttgggctggaagaagagcaggggg
aggggcccgagaagcggaggaaagaaaggcggaagaagtggaggagaaggagggacgtct
gatttggattcagactctgattcaggctcgtctacctcctcccggcgatcagaaagctct
gacgacagtggggacagcgacgcagagagggagagagttgctctgaagatggaggaagat
ggagagaacagcatgctctcaatgactccatctcaagatggcgcgccaccggagtccctc
actgaccccttcagggttgactggcccaaggaccgtgtgttaataaaccggctggacagc
ctctgtacactggtgctgtctgggcagtggccgacagggcgacgctacgcctctgacgcc
cagctcaacccaggctctgacgacctaggggcaggggatgagctcagctttgcacggctc
atgcggaaaagccacatcacacccggtggagaaggagcagatggagaggaatctgagttc
acggtcaaactcctcaaggaggaggggctgaagctgaccttctctaagcatgccttgatg
tccaacgggtcagggggagaggggagcgggcgcaggaagcgtagggaccaagaattgtca
gatccagacggaacggtcgcggtggtcgatgccatgacgggcacagtgctgagtggggag
cgggcccctcgacgcagggacttgcccaactggctgaaggagaacccagaatatgaggtg
gagggagacatgctggagctccttgtgaacaggagcaagaggaagaagaagaggacggag
aaggcagtagcgctgtcgggcagtgagaagattaacataattgatatgaggacaggaaag
aaggttggggctgcgcatggacctatgctgcaggatctgagggagtttctggaggagaat
cctgactgtgcagttgcaccagagtgggctgagactgtccggtgctctggctttctgcca
gacagcctcttccaccggctactctccgcacactctgtcattcccaagagagaccgtcac
caccgccaccaccacgctccccagccggacccgctggaggacccactcctgggcggaggt
gaagaagagaccctggtctcagacggggcctacatgatggaggacgaagacttggaagat
tcttctttcctgactcaagcctttgatgttaagatggaaggtggcgacagcttgtcacaa
ggcggatacgagagttctgacagggaggcccttttggacgacgtcattatggcgcagaag
gactcggactcttcctccagctcagaggattga
DBGET
integrated database retrieval system
