Salvelinus sp. IW2-2015 (Arctic char): 111979347
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Entry
111979347 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-gamma-A-like
KO
K08524
retinoid X receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04148
Efferocytosis
salp04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111979347
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
111979347
03320 PPAR signaling pathway
111979347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111979347
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111979347
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
111979347
Nuclear receptors [BR:
salp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
111979347
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
111979347
NCBI-ProteinID:
XP_023865596
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Position
LG19:29454175..29475484
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AA seq
508 aa
AA seq
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MRIIAGVGDSGGKEESDLIDISQSELDMYVNYQPLMLLPDFDSSSVQVSHLSSTPSQSLS
TMVGPPHHHPYHHHHHHHHHHPSVISASVNPGQPLPSPMSTLGSPFNGQGGSPYSVITSS
SLGSPGVSIPPTPTMGFSTLSSPQMNSLNNVSSSEDIKPPPGLAGLVTXTATLHEPRVHV
QHICAICGDRSSGKHYGVYSCEGCKGXFKRTIRKDLSYTCRDSKQCLIDKRQRNRCQYCR
YQKCLAMGMKREAVQEERQRGREKSDNEVESTSSFNEDMPVEKILDAELAIEPKTEADME
ASAGNSKNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS
HRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIV
LFNPDAKGLSNPTEVEALREKVYASLESYTKHRYPEQPGRFAKLLLRLPALRSIGLKCLE
HLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcatagcaggtgtcggagattccggaggaaaagaggaaagcgacttaatagac
attagccaatcagagttagatatgtacgtaaactaccagcccctgatgctccttcctgac
tttgacagttcttctgtgcaggtatcgcacctgagctccaccccgtctcagtccctcagc
accatggtgggaccccctcaccaccacccctatcatcaccaccatcatcatcatcaccac
cacccctccgtcatcagtgcctctgtcaaccccgggcagcccctcccgtctcccatgagc
accctgggctcgccgttcaacgggcagggcggctcgccgtactccgtcatcacctcgtcc
tctctgggctccccaggtgtctccatcccccctactcccaccatgggcttcagcacactc
tccagcccacagatgaactctctgaacaatgtgagcagcagtgaggacatcaagcctcct
ccaggcctagctggactggtgacatgaacagctacgctgcatgagcccagggtccatgtc
caacacatctgtgccatctgtggggaccgatcctcagggaaacactatggcgtgtacagc
tgtgaaggctgcaagggcnttttcaagagaaccatcaggaaggacctcagctacacgtgt
cgagacagcaagcagtgcctgatcgacaagcgccagcgcaaccgctgccagtactgccgc
tatcagaagtgtctggctatgggcatgaagagagaagcggtgcaggaggagcgtcagcgg
ggccgggagaagagtgataacgaggtggagtctaccagtagttttaacgaggacatgcct
gttgagaagatactggacgcggagctggctatcgaacccaagactgaagccgacatggag
gcgagcgcaggaaactctaagaacgacccggtcaccaacatctgccaggcagcagacaag
cagctgttcaccctggtggagtgggccaagaggatcccccacttctctgagctgcccctg
gacgaccaggtcatcttattacgagcaggttggaatgagctgctcattgcctcgttctcc
caccgctctgtgacagtgaaggatggtatcctattggccacggggctccacgtacaccgc
agcagcgcccacagtgccggagtgggctccatctttgacagggtgctgacggagctggtg
tctaagatgaaagacatgcagatggacaagactgagctgggctgcctccgagccattgtt
ctcttcaacccagatgccaagggcctgtctaatcctacagaggtggaagccctgagagag
aaggtctacgcctcactggagtcctacactaaacacagatatccggagcagcctggcaga
tttgccaagctgttgctgcgtttgcctgcactacgctccatcggcctcaagtgtctggag
cacctcttcttcttcaagctgataggagatacgcccatagatactttcctcatggaaatg
ctcgaagcgccgcaccagatcacatga
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