Salvelinus sp. IW2-2015 (Arctic char): 111979393
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Entry
111979393 CDS
T05762
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111979393
03015 mRNA surveillance pathway
111979393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111979393
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111979393
5.6.2.5 RNA 5'-3' helicase
111979393
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111979393
mRNA cycle factors
Common to processing body (P body) and stress granule
111979393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
TraI_hel_assoc_N
Motif
Other DBs
NCBI-GeneID:
111979393
NCBI-ProteinID:
XP_023865666
LinkDB
All DBs
Position
LG19:complement(30900142..30915863)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVLQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMNIPF
NLVMPPMPPPGYLGQVHCPPAGRGGGMKGKAGGGGARGGRQRSRGMGNHGGGSGQHGLMS
GSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagttgcttggagcagatacccagggttcggagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagttctgcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcatgatcctgcgtgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagactgtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcaactccgggcccgccagatcactgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactacgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccattgagctgaggagcagtgctggggct
cccgtggaagtaccacacaacttccaggttgactttgtgtggaagtccacctcctttgac
cggatgcagagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccataagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccagggkccccctggcacagggaaaacggtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcgtcggatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gaccctcgcctggccaagatgcagttccgctccatcctcattgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagttgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggccgccaaggcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacaa
ccagacaagcccatgttcttctacgtgaccctgggccaggaagaaattgcaagctctgga
acctcctatcttaacagaactgaggcttccaacgtggagaagatcaccaccaggctgctc
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagtttagcggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagaaaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaagctggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgcaagggaggctctt
attcctggatctgtgtatgaccgcagcagcactggacgttcatccaacatgtacttccag
acccacgaccagatcggcatgattggcccgggccccatggcctccatgaacatccccttc
aacctggtcatgccccccatgccgccgccaggctacctgggccaggtccactgcccccca
gcaggccgtggtggaggtatgaagggtaaggcgggcggcggaggggcgcgaggtgggcgc
cagaggagccgtggcatggggaaccacggcggaggcagcgggcagcacggcctcatgagt
ggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctcacccag
ggctacatcaccatgagccagccctcccagatgagccagcctggcctctcccagcctgaa
ctctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcc
caagactccacctaccaaggggaaagagcctatcaacatggtgtgactggactgtcccag
tactag
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integrated database retrieval system
