Salvelinus sp. IW2-2015 (Arctic char): 111979467
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Entry
111979467 CDS
T05762
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111979467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111979467
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
111979467
Prokaryotic type
Archaeal type
TFB
111979467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
Sigma70_r4
RB_B
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
111979467
NCBI-ProteinID:
XP_023865801
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All DBs
Position
LG19:32520062..32529988
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AA seq
318 aa
AA seq
DB search
MASTSRGDVLALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNE
KATQDPSRVGDAQNPLLNGGDLSTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacgagccgcggagatgtcctggcccttcccaaggtgcagtgccccaaccac
ccagatgccatgctggtggaagactacagagcaggggacatgatctgccccgagtgtggc
cttgtagtgggtgacagggtgattgatgtgggttcagagtggaggaccttcaccaatgag
aaagccacccaagacccgtccagagtgggcgacgcccagaatccactcctcaacggggga
gacttgagcaccatgatcagcaagggaacaggcgcggcaagttttgatgagttcggcaac
tccaagtaccagaaccggcggaccatgagcagttcagaccgcgccatgctaaacgccttc
aaagagattaccaccatggctgaccggatcaacctaccaaggaacatcatagaccgaaca
aataacttatttaagcaagtgtacgaacagaagagcctgaaggggcgggccaacgacgcc
atcgcatcagcctgcctctatatcgcctgcagacaagagggtgtgcctcggacatttaaa
gagatctgtgccgtgtcccgtatctccaagaaggagattggccgctgcttcaagctgatc
ctcaaggccctggagaccagcgtggacctcatcaccaccggagacttcatgtcccgcttc
tgctccaacctgggcctgcctaagcaggtgcagatggcggccacctacatcgcccggaag
gccgtggagctggacctggtgcccggcaggagccccatctctgtggctgccgcygccatc
tacatggcctctcaggcctctgccgagaagaagacccagaaagagattggagacatcgcc
ggtgtggcggatgtcacaatcagacagtcgtacagactcatctacccccgcgctgccgac
ctctttcccccggacttcaaattcgacacccccgtggacaaactgccccagctgtga
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