Salvelinus sp. IW2-2015 (Arctic char): 111979751
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Entry
111979751 CDS
T05762
Name
(RefSeq) tenascin-R-like
KO
K06252
tenascin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111979751
04518 Integrin signaling
111979751
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111979751
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111979751
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111979751
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_PBP1
Pur_ac_phosph_N
EGF_Tenascin
Fn3_VIN3
Fn3_Dep-1_2nd
EGF_2
Interfer-bind
FN3_Tor_3rd
Fn3_Dep-1_1st
DUF4998
Fn3_ELFN
DUF7949
SPE9_EGF_3rd
Motif
Other DBs
NCBI-GeneID:
111979751
NCBI-ProteinID:
XP_023866210
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Position
LG19:complement(22213654..22392596)
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AA seq
1116 aa
AA seq
DB search
MGPARGWLLGLVLLLLGTQAALSPSGEEGKLVRTIRVRRQAPSDGPTSQSNNQTIKEQPM
VFNHVYNINVPLESLCSVDLDSAVPPPSQATRGAVSSGGGEGATEFTEQTVDADSQVTFT
HRINIPKQACACPTANIVQQLAIRIEMLEREVLLLRAQCSSGNCGCGESSSMGHLDFIPQ
CSGHGSFKMDLCGCVCEDSWTGKNCSEPRCPDDCSGQGVCMEGECVCDSDFGGDNCSEPR
CPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQCRPGYVGEDCSL
AYCANNCSQKGICKEGFCVCQDGFAGEDCSAVAPALNLRMRGVTEHTIDLEWEGSVLMTD
YLVTYVATSPGGVQLEIRIPGNTTSCSIPDLEPGIEYNINVYAVLNNVISAPTNTQVSTY
LSNPDGLLFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGL
RPGEEYTVNLVALRDQGRSQPVSATVTTLIDGPTQLIVRDVSDSVAFVEWTNPKAKMDQI
VLRYGLVGGDRPKTTFRLQPTLSQYSLQMLRPGSRYEVSISGVRKGNESGTISTEFSTVL
VFLSEIDAPKNLRVLSKFSTTLELEWDNSEAEVEGYQVVYSTLAGDQYEKVIVPLNDGPT
SKTTLTNLLPGTEYGIGISAMLGTNQSSPATMNARTGLDVPMDLTVTASTDNTITLLWGV
VQGPIDHYMVTYTSSSGLTTEVTVPKDVTTTTLNDLEPGTEYTITVAAQRGRQQSTAATI
DGFTGSRPIIALYLSDVTWDSVTVAWSAPAPPADLYILTYSSEDGTDTSKVTLDGSKTRS
SIKGLLPSTEYTISLITIHGEVKSEAVTATLTTGMDPPKEMTVSYATEDSVIISWLRPFA
PFDYYKMSYQSARGTVDSVVIDNDVTNYTLSSLHPATEYEINLNVVRGSQESKSITTSVF
TAMDMPMELTALNITPQGALLRWNPPLSSVDNYVFTLTCNQVTANTFLVEGVKQEHQLSK
LKPSTTYSVALYATKGPLTSGTVIANFETPMDAPLNLTASEVNHRSALISWQPPIADIDN
YMLTYKSVDGNRKELILDAEDTWIRLEGLQRPQNTL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgggccctgcacgaggctggctgctgggcctggttctactccttctggggacccaggct
gctctatccccatccggtgaggaggggaagctggtccggaccatcagggtcagacgacag
gcaccttcagatggccccaccagccaatctaacaaccagaccatcaaggagcagccaatg
gtcttcaaccatgtgtacaacatcaacgtgcccctagagtctctgtgctcggtggatctg
gattcagcagtgcctccacctagccaggccactagaggggctgtgtccagtgggggtggg
gagggcgccacggagttcacagagcagacagtggacgcagacagccaggtcaccttcacc
caccgcatcaacatccccaaacaggcctgcgcctgtcctacagccaacatcgtgcagcag
ctggccatccgcatcgagatgttggagagagaggtgttgctgctgagagcccagtgcagc
tctggcaactgtggctgtggggagagttcatccatgggtcacctggacttcattccccag
tgcagtggccatggcagcttcaaaatggacctgtgtggctgtgtgtgtgaggacagctgg
acgggcaagaactgctctgagccgcgctgcccagacgactgctccggacagggagtgtgt
atggagggtgagtgtgtgtgtgacagtgacttcggaggggacaactgctcggagccccgc
tgcccggcggactgctccggtcgagggctgtgcatggatggggagtgtatctgtgaggag
aacttcactggagaggactgtacactgggacgctgcctcaatgactgctctgaccagggg
ctgtgcaccaacggaacctgccagtgtcgcccgggatacgtaggagaagactgctccttg
gcctactgcgccaacaactgcagtcagaagggcatttgtaaagaaggcttctgtgtctgc
caagatggcttcgctggagaagactgctctgcagtggctccggctctgaacttgcgcatg
cggggagtgacggagcataccattgacctggagtgggaggggtcagtgttgatgacggac
tacctggtcacctacgtggccaccagcccaggtggggtccagctggagatcaggatccct
gggaacaccacctcctgcagtatcccagacctggagcctggcatcgagtacaacatcaac
gtctacgctgtgctcaacaacgtcatcagtgcccctaccaacactcaggtgtcaacctat
ctctcaaatccagacggtttactcttcaaatccatcacggagacatccgtggaggtgcag
tggcaacctttctactactcatttgatggctgggaaataagcttcattcccaaggacaat
gatggagggatgacagcccagctacccagcaccatcacttcgttccaccagacaggcctg
aggccaggggaggagtataccgtcaacctggtagctctgagggaccaaggccgcagccag
cctgtatctgccaccgtcaccacattgattgatgggccgacacagctgatagtgcgtgat
gtctcggactcggtggccttcgtggagtggaccaatcccaaggccaagatggaccagata
gtgctgcgttatggcctggtaggaggggacaggcccaagactactttccgtctgcagccc
accctcagccagtactccctgcagatgctgaggccaggctcgcgctatgaggtgtccatc
agtggtgttcgcaagggcaatgagagtggaacaatctccacagaattcagcaccgttctg
gtgttcctctcagagatcgacgcccccaagaacttgcgagtgctgtccaagttctccacc
accctggagctggagtgggacaacagcgaggcggaggtagaggggtaccaggtggtctac
agcaccctagcaggggaccaatacgagaaggtcattgtcccactcaacgatggacccacc
agcaagaccacactcacaaacttgttgccaggtacagagtatggcattggcatatcggct
atgcttggcaccaaccagagttctcctgccacaatgaacgccagaactggtctggatgtc
cccatggacctgactgtgacggcgtccacagacaacaccatcaccctgctgtggggggtg
gtccaggggcctatcgaccactacatggttacctacacctcctcatctggcctgaccacg
gaggtgaccgtccccaaggacgtgaccaccaccacgctcaatgacctggagccaggcaca
gaatacaccatcactgtagctgcccagaggggaaggcagcaaagcactgcagccaccatt
gatggcttcacaggctcccgccccatcatagcactctacttgtctgatgtcacatgggac
tcggtgacggtggcatggagcgcccctgccccacccgcagacctctacatcctcacctat
agctctgaggacggcactgacacgtccaaggttaccctggatggatccaagacccggtcc
tctatcaagggactcctgccctccacagagtacaccatcagccttatcaccatacatgga
gaggtgaagtctgaggctgtcacagccacgctcaccacaggaatggatccacctaaagag
atgactgtgtcatatgccactgaagactccgtcatcatatcatggttgagaccattcgct
cccttcgactactacaagatgtcctatcaatcagcaagagggacagtggacagcgtggta
attgacaatgacgtcactaactacaccctgtccagcctccacccagcaacagagtatgag
atcaacctgaacgttgtgcggggcagccaggagagcaagtccatcaccaccagtgtcttc
acagcgatggacatgccaatggaactaacagccctcaacattaccccacaaggagcttta
ctccggtggaaccctcctctgtccagcgttgacaactacgtgttcaccctcacctgcaac
caggtgacagctaataccttcctggtggaaggtgtgaaacaggagcaccagcttagtaaa
ctcaagcccagcaccacttactctgtagccctctacgccaccaagggacccttgaccagt
ggaaccgtcatcgccaactttgaaacacccatggacgctcctctgaacctgacggctagc
gaggtgaaccaccgcagtgccctcatctcctggcaaccgcccatcgcagacatcgacaac
tacatgctcacatacaagtcagtggatggcaacagaaaggagctgatcctggatgccgag
gacacttggatccgtctggaggggctgcagagaccacagaatacactgtga
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