Salvelinus sp. IW2-2015 (Arctic char): 111980009
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Entry
111980009 CDS
T05762
Name
(RefSeq) POU domain, class 2, transcription factor 1
KO
K09364
POU domain transcription factor, class 2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
111980009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111980009
03021 Transcription machinery [BR:
salp03021
]
111980009
Transcription factors [BR:
salp03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
111980009
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
111980009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
DUF3839
T6_Ig_like
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
111980009
NCBI-ProteinID:
XP_023866465
LinkDB
All DBs
Position
LG2:complement(40370718..40381290)
Genome browser
AA seq
711 aa
AA seq
DB search
MADGGAASQDESSGPDSRMSNASETSKCGMESGDGNTEIQTNGLDFQRQTVQTTSAITNA
HTQALLQQLTLSPAQQQLLLQQAQAQLLAAAMQQQSASQQSSTTGASISASAATPITQLP
LSQPIQITSIPSGSTHLPGQLSQLGYPYEMATFSSYLPQLQQLQQQNLTMPQFVLVQPGH
HIATQLQPGQFIISQSPQGQQSLLQGQSLLTQLPQSQANLLQTHPSITLATQPATPTRTI
AATPIQPLSHSQTSPPKRLATPSLEEPSDLDEXEQFAKTFKQRRIKLGFTQGDVGLAMGK
LYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDADNLSSDQALSSPSALGSPGLGM
EGLNRRRKKRTSXETNIRLALEKRFLEQNQKPTSEEITIIADQLNMEKEVIRVWFCNRRQ
KEKRINPPSGGYSNTGTGSSPIKTIFTPTIPLVASTASLVTSNTPTTLTVNPVMPLNSTS
VSALTFTGTTIGATTNTASVISTAPMVTAVTSSPSLSPSPTAGTGGTQEHTVVTQAPSSL
ATTLGTGQVMVAGLGLSAALQGAAQLPTSASFAAMAGLNQGLMASSQFTPGGALLSLAPG
GLGGALNTAMLSNSTLATIQALASGGALPITSLDGSGNLLFANTSAGSTPNLMQPLFLNP
QNLSLLTTNPVNLVSAGAAGGGALQVSADHQVTTATVPVPASTITTASRTQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggagcagcgagtcaagatgagagttcaggaccagattctagaatgagt
aatgcgtcagaaacgagtaaatgtggaatggagagtggggacggaaacacagaaatccaa
acgaatggactggactttcagaggcagacggttcagaccacaagcgcaatcaccaacgca
cacacacaggctctcctccaacagttgaccctgtctccagcgcagcagcagttgttgttg
caacaggcccaggcccagctcctagcagcagccatgcagcagcagtcagccagccagcag
agcagcactacgggggcaagcatctctgcctctgcagccacccctatcacacaactgcca
ctgtcccagcccatccagatcacctctattccctctggttctacccatcttccaggccag
ctaagccagctgggatacccctatgagatggcgaccttcagcagttacctacctcagtta
caacagctgcagcagcagaacctgaccatgccccagtttgtcctggttcagcctggccac
cacatcgccacccagctgcagcctggccagttcatcatctcacagtcgccgcagggccag
cagagtctcctgcaaggccagagtcttctaactcaactacctcaaagccaagccaacctc
ctgcagactcatcccagcatcacgctcgccacacagccagcgactccgacccgcacgata
gcagckacgcccatccagcctctgtcccacagccagacctcgccccctaaacgcctggcc
acgcccagtctggaggagcccagtgacctggaygagrtggaacagtttgccaagaccttc
aaacagagacgcatcaaactgggcttcacacagggagatgttggcctggccatgggcaag
ctgtacggtaacgacttcagccagaccaccatctcccgcttcgaggccttgaacctgagc
tttaagaacatgtgcaagctgaagccactgctggagaagtggctcaacgatgcagacaac
ctgtcgtctgaccaggccctgtcragccccagcgccctgggctcccctggcctgggtatg
gaggggctgaaccgccgacgcaagaagaggaccagcatrgagaccaacatccgcttggcc
ttagaaaagagatttctggaacagaaccaaaaacctacctctgaggagatcaccataatt
gctgaccagctcaacatggagaaggaggtgatccgggtttggttctgtaaccgcaggcag
aaagagaagagaatcaacccccccagcggtggatacagcaacacagggacaggcagcagc
cccatcaaaaccatcttcacccctacgatccccctggtggccagtacggccagccttgtg
accagtaacacaccgaccacactgactgtaaacccagtgatgcctctcaacagcaccagc
gtgtctgccctgaccttcacaggcacgaccataggagcgaccacaaacacggcatccgtc
atctccactgcacctatggttactgcggtgaccagctccccatcgctaagcccctccccc
acggcggggacgggcggaacccaggagcacacggtggtcacgcaggcaccgtcgtcccta
gcgaccactctggggacgggtcaggtgatggtggctggactgggcctgtcggccgccctg
caaggcgccgcccagttacccaccagcgctagtttcgctgccatggccgggcttaaccaa
ggacttatggcgtcatcgcagttcactcctgggggggccttgttgagcttggctccaggg
gggctgggaggggctctgaacacrgccatgttgagcaacagcaccctagccaccatccaa
gctctggcatcaggcggcgctctccccatcacctcgctggacgggagcggtaacctgctg
ttcgccaacacctccgccggcagcacccccaacctgatgcaacccctcttcctgaacccc
cagaacctgtccctgctcaccaccaaccctgtcaacctggtgtcagccggagctgctggg
ggcggggccctgcaggtctcagctgaccaccaggtcaccacggcgactgtaccagttccc
gcttccaccatcaccactgcctccaggacccagtga
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