Salvelinus sp. IW2-2015 (Arctic char): 111980191
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Entry
111980191 CDS
T05762
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
111980191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111980191
03041 Spliceosome [BR:
salp03041
]
111980191
03036 Chromosome and associated proteins [BR:
salp03036
]
111980191
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111980191
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111980191
mRNA cycle factors
Common to processing body (P body) and stress granule
111980191
Spliceosome [BR:
salp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111980191
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111980191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
111980191
NCBI-ProteinID:
XP_023866634
LinkDB
All DBs
Position
LG2:40858987..40882372
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AA seq
702 aa
AA seq
DB search
MSHVVVDNXHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNDSPGGWDGGRSNG
FTNGYHDNRNGGRGGPPRNDRGFGGGQDGGSWGTAPRQDAAYNSFGGRGKSSFYSDRGSS
GGRGGYQRGGYGGGGGNNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDDI
PVEATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQT
GSGKTAAFLVPVLSQIYTQGPGDATAASKNGQDSGKYGRRKQYPLSLVLAPTRELALQIY
EESRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNY
LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFL
AVGRVGSTSENITQKVVWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLVF
VETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDI
SNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEV
PSWLESLGYENQHKGNTGRGRSKRFSSSGFGARDYRQTPGGGGFGGGGGRGGPRTGGHGG
GGGSRGGFGGGGFGGGNSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatcmacacggtctagatcagcagcttgctggcctagac
ttgaactcagacggacagggaggaggcactggccggcgttacattccacctcacttgagg
aacaaagaggtttccaaaaacgactctccaggaggatgggatggcggacgcagcaacggc
ttcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agagggtttggtggtggacaagatggtggaagctggggcactgctcccagacaagatgca
gcctataacagctttggaggcaggggaaaatcttccttctacagcgaccggggatcatca
gggggcagaggcggttatcagcgtggagggtatggtggtgggggtggtaacaaccgctgg
caggaagactccagagacgacgaggactggtccaaacccagccccgctaacgaacgcctg
gaagcggagctgttctcaagcggcaacactggtattaactttgagaaatacgatgacatt
cccgtggaggccactggctccaactgcccgccacacatcgatagtttccatgatgtggac
atgggggagatcatcatgagtaacattgccctgacccactacacgcggcccacccccgtc
cagaaatacgctatccccgtcattaagtctaagagagacctcatggcctgcgctcagact
ggctcgggtaagacggcagccttcctggtgccagtgctgagccagatctacacacagggg
cctggagacgccacagcggcttccaagaacggacaggacagtggtaaatatgggcgccgt
aagcagtatcccctctccctggtcctggctcccaccagagaactggccctgcagatatac
gaagagtccagaaagtttgcgtaccgctcccgcgtgcgtccctgcgttgtgtacggaggg
gctgacatcggccagcagatcagagacttggagcgaggttgtcatcttctggtggccaca
cctggacgcctggtggacatgatggagaggggcaagattggcctcgactactgcaactat
ttggtgctggatgaggctgacaggatgctggacatgggctttgagccccagatcagacgc
atcgtggagcaggacaccatgccccctaaaggcatccgtcagaccatgatgttcagcgct
accttccccaaggagattcagatgctggcgcgtgacttcctggaggactatatcttcctg
gctgtgggccgcgtgggctccacctctgagaacatcactcagaaggtggtgtgggtggag
gacggtgacaagaggtccttcctcctggacctgctgaacgctacagtcattcccagtgac
gctcctgatgttcaggaggctgcagtgacacctggtaaagagtctctgacgttggtgttt
gtggaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggctacgcc
tgcaccagtatccacggagatcgctcccagagagacagagaggaggcgctgaaccagttc
cgctccggacgctgccccattctggtggccaccgcggtggctgctcgtggtctggacatc
tccaacgtcaagcacgtcatcaactttgacctgcccagcgacatcgaagagtacgtccac
cgtattggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttcttcaacgac
aagaacagcaacatcaccaaagacctactggacatcctggtggaggccaagcaggaagtc
ccctcctggctggagagcctgggttacgagaaccagcacaagggcaacacgggacgcgga
cgctctaagaggttttcctctagtggatttggtgccagggactaccgccagacgcccggc
ggcggtggctttggtggtggtggtggacgcggcggccctcgcaccgggggtcacggagga
ggaggaggaagtcgtggcggcttcggtggaggtggctttggaggcgggaactcttatggt
ggtaacgacgctggctacggtggcaactacagccactccggtagtggaaccgactggtgg
ggcaactag
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