Salvelinus sp. IW2-2015 (Arctic char): 111980349
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Entry
111980349 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111980349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111980349
03009 Ribosome biogenesis [BR:
salp03009
]
111980349
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111980349
Spliceosome [BR:
salp03041
]
Complex A
U1 snRNP components
U1 related factors
111980349
Complex B
111980349
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111980349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111980349
NCBI-ProteinID:
XP_023866840
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All DBs
Position
LG20:76537956..76543393
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AA seq
617 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGGKFGNPGDRLRKKHWNLDELSKFDKN
FYQEHPDVTRRSPQEVTQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKT
NMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDY
VQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEI
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADR
GGHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGA
SGFDKSGNGFGGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGTQNGMSHQQFPFTQQ
QAPQPMVPYSMPPQFPQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggcggaagaggaggaggtggtggtggtggggggaagtttggtaatccc
ggtgatagactgcgcaagaagcactggaaccttgacgaactctctaaatttgacaagaac
ttttaccaagagcaccccgatgttactcggagatctccgcaagaggttacacagtacaga
agtactaaagctgttactgtgaaggggagggactgccctaatccaattatgaagttccat
gaagccagttttccaacctacgttatggatgtcattaacaaagcaggatggtcagaacca
acaccgatccaagcacagggttggccactggcgttgagtggcaaggacatggttggcatt
gcacagacaggctctgggaaaactctctcgtacttgttgcctgcaatcgtgcacattaac
caccagcctttcctggaacgtggagatggccctatttgcttagtgcttgcccctacccgt
gagctggctcagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaag
tctgtctgcgtttatgggggygcgcccaaagggcctcagctccgtgacctggatagaggt
gtggagatttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagacc
aacatgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggt
ttcgaaccacaaatccgaaaaattgtggaccaaatccgacctgaccgacagactctgatg
tggagtgccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactac
gtccagatcaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtg
gatgtttgcaatgatggcgagaaggaagacaaactcctccgcctacttgaggagatcatg
agtgagaaggagaacaagaccataatctttacagagaccaagaggcgatgtgatgagatc
actaggaggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccag
caggagagggactgggtgctcaatgagttcaagttcggaaaggctccaattctcattgcc
acagacgtcgcttccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgac
taccccaacaactctgaggactatatccaccgcatcggcagaactgcccggagccaaaag
actggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgtt
gcygtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacaga
ggaggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacagg
tactcctccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggt
tttgacagtggaccaaagaaggtctttggcacaaattcacagagtggaggctatggggca
agtggctttgacaaaagcggcaatggttttggcggctacggcagcaacggccagtcaaac
tatggtaccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagt
gccaaccagggaggtacacagaatggcatgagccatcaacagttccccttcacgcagcaa
caagcgccacagcccatggtgccttactcaatgccccctcaattcccacagtaa
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