Salvelinus sp. IW2-2015 (Arctic char): 111980526
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Entry
111980526 CDS
T05762
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04270
Vascular smooth muscle contraction
salp04625
C-type lectin receptor signaling pathway
salp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
111980526
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
111980526
09153 Circulatory system
04270 Vascular smooth muscle contraction
111980526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111980526
Membrane trafficking [BR:
salp04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
111980526
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
111980526
NCBI-ProteinID:
XP_023867063
LinkDB
All DBs
Position
LG20:complement(29775017..29905579)
Genome browser
AA seq
1505 aa
AA seq
DB search
MSETQSTLTDRVPKKATRTLSILSKDHPPDKKPKSDKNTVPPLHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQIPLSEGEGGDPGVLSSSLSSPHSPGTMGGTGQRCSTSTSPQDHI
ISPLPLWEENNSVHSQNVDILQKMLSKEQQDIQAMKEEYSRNPTAKLLKDIQEAKKHIPL
LHGQLRKTTGTPXDGSLSPWNGEGGGVGAADGAQTPSSQVESGSNGTWTNNTVSPSPLPE
SPCQRETPCHCPKTTPRDSLNSCPSPDAEDTPDLNCNFQCSVGRPLSRLNPQIIGAEDDY
FDTEQEQINGQCCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKE
TRRIFMDFHTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRPYIQLLQDTLLPDIQ
GNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVALDRERSCAEHIISKIEDILLTSQPTE
EEKCTTMQYVILTYMKHLGVKVKEPRXLEPKRVRINFLPKIKKSIKTEKEGEDKVKKPRF
PSILGPPRRPSRVDSTSIGKAIEMNKQRGPQKQLSQPILSIPDHPESSARGSQSRDPGSD
VATHPSAFIASPPHSAPASQGSDPMGHDSDSGLTPSSALPRLSSDWLHPGDTQDRMAHPT
STHFDFSPCTLDQLQEEERESDGVQEGGTPKPARRMQGLGCADVPSEDDLGNEIECKQDS
PNWQTLVSREVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPG
DIKHIFTNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGT
FCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLES
IAKYTEDAAERDKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPM
ISEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNL
AGTADTKHIFSPVIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCL
ITQRADTMNTKPHNIIPLPQTDAERDAVEVISTGIPKLSKDPDRLSTGSIQFAEKYVTSS
PGLQPTPTSINPFDSIKSDDKEEESLLLLDRREEEEVEEADEEEVEAFLVGELADRLPLL
QERSCQGIAIDDQEPHDAFVMPPSRAEEALRTLAALRQVLLNHITSREEGSDKNNENRKE
KEQRMGLAHGSRLLRTTSLRGPEDSNSSTSGPRSAAASSPGSSENGTSERTEAGREEGAP
GSSELPPGDTGFFETSEDYGSYIVLGGSGESSTDDDGQASGKGGGRAQWGSDIDLKKLLS
SSSQTGDAGPNLSRQVMTHIRLLQANLQHLKMRVSGDRAPNPPPQENKIVTLTGRGTPGH
LSLSS
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacagggttcccaaaaaagcaaccaggaccctt
agcattctcagcaaggaccaccccccagacaagaaacccaaaagtgacaaaaacacagtc
ccacctctgcatgagtttgaccctacagggcttgtccagcgttgtgtgatcattcagaaa
gatgagaacggctttgggytgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggctctgccatgcgagcaggcgtccagacgggtgataggatcatcaaggtt
aacgggagcttagtaacacattcaaaccatgtcgaagtcgtaaagttaatcaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccgggactggcccaaatccccctgtca
gagggcgagggtggagacccaggggtcctgtcgtcgtccctctcctcaccccactctcca
ggaacaatggggggaacagggcagcgctgctccacctccaccagtccccaggaccacatc
atctccccgctgcccctctgggaggagaataactctgtacacagccagaacgtggacatc
ttacagaagatgctgtccaaggagcagcaggacatacaggctatgaaggaggagtacagc
aggaaccccacagccaaactactgaaggacatccaggaggccaagaaacacattcctctg
ctgcatggccagctcagaaagaccacaggcacacctmaggatggctccctctccccctgg
aacggtgagggggggggcgttggggcggccgatggagcgcagaccccctcctcgcaggta
gagagcggcagcaacggaacctggaccaataacactgtgtctcccagtcccctccctgag
agtccgtgccaaagagagaccccctgccattgcccaaagaccaccccccgagacagcctc
aactcctgcccctcgcctgacgccgaggacacgccggacttgaactgtaacttccagtgt
agtgtgggcaggcccttgtcccgtctcaacccccagatcatcggagcagaggacgactac
tttgacaccgagcaggaacagatcaatggtcagtgttgttgtttccagagtatagagctg
ctcaagtctcggcccgctcacctggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctgtgctacctttacgccgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctattgcctctgaactagatcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgctacaggacacactgctaccagacatccag
gggaacctagaggacttcaggcagaagcgcagcatgggtctgaccctggcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtggcgctggatagagaacgctcc
tgtgccgaacatatcatctccaagatagaggacatcttgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgttatcctcacatatatgaaacacctgggagtt
aaagtgaaggaacctcgtarcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaaactgagaaagagggggaggataaggtgaagaagcctcgtttt
cccagcatcctcggccctcctcgtcggcccagccgtgtggactccacttcwatcggcaag
gccatagagatgaacaagcagcggggcccccagaagcagctctcccagcccatcttaagc
atccccgatcacccagaatcctcggcccgcggcagccaatcaagggatccaggctcggat
gtggccacccacccctcggccttcatcgcatcacccccacacagtgccccagccagccag
ggctccgacccaatgggacacgattctgactcgggtctcactccctcctccgccctgccc
agactgagctctgactggctccacccgggcgacacccaggacaggatggcccacccaacc
agcacccactttgacttcagcccctgcaccctggaccaattgcaggaggaggagcgtgag
agtgacggagttcaagagggaggcacacccaaaccagcccggaggatgcagggtttaggc
tgtgcagatgtgccgagtgaggacgacctggggaatgagatcgagtgcaagcaggactct
cccaactggcagacactagtcagccgagaggtcctggcgggcctgacgccacaggagatc
aagagacaggaagtcatcaacgagctgttctacacagagcgagcccacctgaggatgttg
aaggtgctggataacgtgttctaccagaaactaacccgagacagcatcttgcctcctgga
gacattaaacacatcttcactaacctagaggagattgtccagctacatgtgtcgataaca
gaacaggtgacagtcattcggaagaagaatgagacgtcagtgatagacctgataggagac
gatctactagcttggttcagtgatggcgaggaggagaagatcaagcgggcggtgggcacc
ttctgcagtaaccagcccttcgcyctggaactcatcaagacccggcagaagaaagaccag
cgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgcagactgcagctg
aaggatatcattccagtggagatgcagaggctgaccaagtatccactactgctggagagc
atagccaagtacacagaggatgcagcggagagggacaaggtgaagagggccggggagtgc
tgcaggaagatcctcaactatgtcaaccagacggtgaaagaggcagagaacaaacagagg
ttagaggactaccaaagacgcctggacctgtcctcactcaaacagagtgagaacccaatg
atctcagagttcaagagcctggacctgaccaagaggaagatggtgcacgagggacctctc
tcctggaaggtcaacaaagacaagacaatcgagctgtacacgctgctcctggaggacatc
ctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccacagcaagaacctg
gcgggcaccgccgacaccaagcacatctttagccccgtcatcaagctcaacactgtgctg
gtgcgctcggtggccaccgacaacaagtccttcttcgtgctgtctatgtccgacaacgga
gcccagatctacgagctaatggcccagacygtrtccgagcaaagaacgtggcagtgtctg
ataacgcagagggcagacaccatgaatacgaaaccgcacaacatcatacctttacctcag
accgatgctgagcgagacgcagtggaggtgatcagcacagggatacccaaactgagcaaa
gacccagaccgcctttccacgggaagtatccagttcgcagaaaaatatgtcacttcctcg
cctggtctgcaacccacgcccacatcaatcaacccattcgacagcatcaaatcagacgac
aaggaagaagagtcgctgctgctgctagacagaagagaagaggaggaagtggaggaggca
gacgaggaggaagttgaagcgtttctggttggagagctggcagacagactgcccttactc
caggagaggtcatgccaaggcattgccatcgacgaccaggagccccatgacgccttcgtc
atgcccccctccagagccgaggaggccctaagaaccttggcagccctgaggcaggtcctt
ctcaaccacataacaagcagagaggagggcagcgacaagaacaatgagaataggaaggag
aaggagcagaggatgggcttggcccatggctcccgcctgctgaggaccacgtcactgagg
ggcccagaggacagcaacagcagtacatcgggccctaggagcgcagcagcatcctctcct
ggctcctcggagaacggcacctcggagaggaccgaggcggggagggaggagggggcccca
ggatcctcggaactcccgcctggggacacaggcttcttcgagacatctgaggactacggc
agttacattgtcctggggggctcgggggagagcagcacagacgacgacggtcaggcgagt
ggcaagggtggaggcagggcccagtggggctcggacatcgacctgaagaagctgctctcc
tcatcctcgcagacaggggatgctggccccaacctcagccgtcaggtcatgacccacatc
cgcctgctgcaggccaacctgcagcacttgaagatgagagttagtggtgacagagcccct
aatcctccaccacaagagaacaaaatagtgacattgacagggagggggacacctggtcac
ctctccctgtcctcttga
DBGET
integrated database retrieval system
