Salvelinus sp. IW2-2015 (Arctic char): 111980747
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Entry
111980747 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111980747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111980747
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111980747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
111980747
NCBI-ProteinID:
XP_023867458
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All DBs
Position
LG20:complement(57401516..57424274)
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AA seq
1386 aa
AA seq
DB search
MPPALGPSRPAAALAEALESSGRIIDRHLQEDRCFPDISELLNVPCHNMPSLSGGSDMDY
PLQEPGLLSVPNLPELSAVRRVPLPPELVEQFSHMQCNCMMGVFPEICRAWLTIDNDIFM
WNYEDGGDVAYLDGLSETILSMGLVKPKAGIFQPHIHFLLVLATPVDVVILGLSFPKAQA
GLNDSMSGGIQLLPNPLYSIPTDNTYHLAITSTDLGRIFLAGKDGCLYEVAYQAEAGWFS
QRCRKINHSKSSLSFLVPSLLQFSFSEDDPVVQIAIDNSRNTLFTRSEKGVLQVYDLGAD
GQGLSRVAAMSQSSIVAAAGNIARTIDCSVFKPIVQISVIDRFESSDCHLLAVTHTGVRL
YFSTTPFAPPHAKHPGARPSLLALVHVRLPPGFSASSTLQKPAKVHKALYIKGVLLMAAS
EAEDSDILWCINHDSFPFKKPLMEAQVMSNVDGHSWALCAIEEEKAPKICTPLNKDQVPL
TDTPVVVKQHNVPPQKFVLISAKGSHIFHKLRPVDQLRHLLVCGTGGESEEVERFFKLHR
EEQACATALILSCSSAACDRKVSQWATRAFFRYGGEAQMRFPSAHSAPSSVGALFGSPVP
GSHMSVGSSPIPNPSFLATPAPGMMPQSVSMPYVPAMPSAPIAGLSSGPEVVFSGKHNGI
SVYFTRILVNIWDGSLAVEKIVIKGNQAVSILESTASSSDLESVLLELRGLKDFLDKNSQ
FSPSSLGTASFSSPANLQQRLLGFMRADGASSQQIQQELQRKYHTEAQVYEKISLQGIQQ
LVHRWCXLALWKLLCDHQFSLIVSELPKEFQDQMKGVSFKDVVIRGLELTGALITALINV
YIKDSASVDAISTHLRDICPLLYSSDDSICSKANELRQGSRQIQTRTDKERTXESLQLYQ
LISHHTDLPLVCSQYRQVRFYERVLELCLTAADKKDPQRLGPHFYKNGESEEDQAGALAF
QERLSCYKCITYTMQELVNQSKAAPQSPSVPKQPGTPVMTSDPNMLSNEDATAHFEQIIG
LAQRSQDELFHIALYNWLIQADLTDKLLEVNSPYLEEHLMHTIKQEQSKVRNMDLLWRYY
EKSRSFGKAAHVLRTCSGMFSTEISLKQRLEYISRAILSAKSSSCISAQGAEGEFLHQLE
EKMEVVCIQVQIQDTLSRQYSQHPSVQGAVSQLDSELMDITKLYGEFADHFRLSECKLAI
IHCAGHSDPILVHSLWQEVMEKELCDSVARSPADRMSALSLKLVSLGKIYAGTPRYFPLE
FLVKFLEQEVCRLNWDVGFVTFTMQEIGLXLPRLLEVYDQLFKKWDPCWQRLKKPLHLVE
CIHVLLSGYVEDPSKVPTYDRRRFTNVCLDNICGYLVELQSLSPNSALQLTIGNFXALQA
KLEKVH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgccttaggacccagcaggcctgctgctgcccttgccgaagcgctggagagt
tctggtcggatcatagaccgacaccttcaagaagaccgctgcttcccggacatctcagag
cttcttaatgtcccctgtcacaacatgccatctttgtctggggggtcagacatggactac
cctcttcaggaacctgggctgctcagtgtgccaaacctccctgagctcagtgcagtccgc
agggttcccctaccacctgagctggtggagcaattcagccatatgcagtgcaattgtatg
atgggagtttttcctgaaatttgtcgggcgtggctcaccattgacaacgatatcttcatg
tggaattatgaggatgggggggatgttgcatatttagacgggctcagtgaaaccatcctg
tccatggggctggtcaaacctaaagcagggattttccagccacacatccacttcctgttg
gtcttagccactcctgtggatgtggtgatcctggggctcagcttccctaaagctcaggca
gggttgaatgacagcatgtctggagggatacagttgctcccaaacccgctgtactccatc
cccacagacaacacctaccacctggccatcacctccactgatctgggacgcatcttcctg
gcagggaaagatggctgcctatatgaggtagcctaccaggccgaggcaggctggttcagc
caacgctgcaggaagattaaccactccaaaagcagcctgtccttcctcgtcccctctctg
ctccagttctccttctctgaggatgacccggtagtgcagattgccattgacaactcccgt
aacactctcttcacccgctcagagaagggggttctacaggtgtatgacctgggtgcagat
gggcagggtctgagccgtgtggcggccatgtcacagagctccatcgtagctgcagcagga
aacattgccaggaccattgattgctctgtgtttaaacccatcgtacagatctctgtgata
gacagatttgagtcctccgactgccacctgctggctgtcactcacacgggagtgcgtctc
tacttcagtactactccctttgccccaccgcatgccaagcacccaggggcacgccctagt
ctgctagctctggtccatgtccgcctgcctccaggcttctctgcctcctccaccctgcag
aaacctgctaaggtccacaaggctctgtacatcaaaggagttctcctcatggcagcttct
gaggctgaggacagtgacatcctgtggtgtatcaaccacgactccttcccctttaagaaa
cccctgatggaggcacaggtgatgtccaatgtagatggccactcctgggcgctatgtgcc
atcgaggaggagaaagcacctaaaatctgtacccccctgaataaggaccaggttcctctc
actgacactcctgtcgtggtgaagcaacacaatgtccctccacagaagtttgtccttatc
tctgccaagggaagtcacatcttccacaagttgcggccggtggaccagctgcgccaccta
ctggtgtgcggtactggtggagagagtgaagaagtcgaacgcttcttcaaactgcacagg
gaggagcaggcgtgtgccactgctctgattctgtcctgttccagtgctgcctgcgacaga
aaggtgtctcagtgggccaccagagccttctttaggtatggaggagaggctcagatgagg
ttcccctcggctcattctgctcctagcagcgttggagcgctgttcggctctcctgtacca
ggatcccatatgtctgttggtagcagccccattcctaaccctagtttcctagctacaccg
gctccaggtatgatgccccagagtgtgtctatgccctatgtaccagccatgccctccgcc
cccatcgctggcttgtcctctgggccagaggtggtcttctcagggaagcacaacggcatc
agtgtctacttcacacgcatactggttaatatctgggacgggagtcttgctgttgagaag
atcgtcattaaaggaaatcaggctgtcagtattttggagagcacagccagctcatctgat
ctggagtcagttcttctggagctccgtggtctgaaggacttcctggataagaactcccag
ttcagcccctcgtctctgggtacagccagttttagctcaccagccaatctgcagcagcgg
ctgctaggtttcatgcgggctgatggagccagttctcagcaaattcagcaggaactccag
aggaagtaccacaccgaggctcaggtctatgagaagatctccctgcagggtatccagcag
ttggtgcatcgctggtgcnacctggccctgtggaagctgctgtgtgaccaccagttcagc
ctcattgtctctgaactacccaaggagttccaggaccagatgaagggggtgagttttaag
gacgtggtgatccgtggtctggagctgaccggagccctgatcacagccctcatcaacgtc
tacatcaaagactctgcctctgtagatgccataagcacccacctcagagacatctgcccc
ctactgtacagcagtgacgacagcatctgctcaaaggctaatgagttgcggcagggctcc
agacagatccagactaggacagataaggagagaacancagagtcattacagctctaccag
ctgatcagccatcacacagacctgccactggtctgctcccagtacagacaggtgcgtttc
tatgagagagtgctggagctgtgcctgactgcagcggataagaaggatcctcagaggctg
ggacctcacttctataagaacggagagtcagaggaggatcaggctggagcactggccttc
caggagaggttgtcgtgttataagtgtatcacatacaccatgcaggagctggtgaaccaa
agtaaagctgcacctcagtctcccagcgtccctaagcagccaggaacccctgtcatgacc
tctgaccctaacatgctgagcaacgaggatgccaccgcccactttgagcagattattggt
ctggcccagaggtcacaggatgaactcttccacatagccctctacaactggcttatacag
gctgacctcaccgacaagcttctggaggtgaactctccttacctggaggaacacctgatg
cacacgatcaaacaggagcagagtaaggtgcggaacatggacctgctgtggagatattat
gagaagagccgcagctttgggaaggcagctcacgtcctgcggacatgctcaggtatgttc
agtactgagatctctctgaagcagaggctggaatacatctccagggccatcctgtcagcc
aagagctcctcctgcatctctgcccagggagctgagggggagttcctgcaccaactggag
gagaagatggaggtggtctgtattcaggtccagatccaggatactctgagcagacagtac
tcccagcatccctctgtacagggagctgtgtcacaactggattcagagcttatggacatc
accaagctgtatggggagtttgcagatcacttccggttgtctgaatgcaagctggccatc
atccactgtgcgggtcactctgaccccatcctggtgcactctctgtggcaggaggtcatg
gagaaagagctgtgtgacagtgtggccaggagtccagctgacagaatgagcgctctgagt
ctcaaactggtgtctcttggaaagatctatgctggaacacccagatacttccctctagaa
ttcctggtgaagtttttggaacaggaggtgtgtcgtctgaactgggacgtgggcttcgtc
acgttcaccatgcaggagataggcttatagctgccccgtctgctggaggtctacgaccaa
ctcttcaagaaatgggatccgtgttggcagcgtctaaagaagcctctccacctggtagag
tgtatccatgtgctgctgtcaggatacgtggaggatcccagcaaagtaccaacatatgac
cgacggcggttcactaatgtgtgtctggataacatctgtggttacctggtggagctgcag
tccctgagtcccaactctgccctgcagctcaccatcggcaacttctaggccctgcaggcc
aagctggagaaagttcactaa
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