Salvelinus sp. IW2-2015 (Arctic char): 111980838
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Entry
111980838 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111980838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111980838
03041 Spliceosome [BR:
salp03041
]
111980838
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111980838
Spliceosome [BR:
salp03041
]
Complex B
Other components
Prp19-related factors
111980838
Complex C
111980838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
111980838
NCBI-ProteinID:
XP_024003527
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All DBs
Position
LG20:complement(68315876..68337380)
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AA seq
850 aa
AA seq
DB search
MPSLNGKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEZHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGTKTXYPEMLR
IKRSVQATYNTQVNXMSSQMMKATTNATSKNSQTCPGPAGLDDMKLXEQQAQQLAAEXEQ
DKPKLKXKILFVRSDTSRSELAELAKQANPDEIDIDDEDGDDEDQGPEEVQLEQKSVPTA
VFGGLKEGDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatgggaaaccggacgtcatatttgaggaagatgacttgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaatggcacaatgtccatcctcaacatgatatatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcagtgtaag
atcaccaggagcagacgcacatttgaccgagcgctccgagcccttcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgccactgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcggcaagctggatgaagcagcagtacgtctggcagccgttgtcaac
gatgagagctttgtgtccaaggagggaaagtctaactaccagctatggcatgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctaggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagttggggaaagatgaagaagaggacata
gacctggagctgcgtctggctcgctttgagcagctgatcgcccgcaggcccctactgctg
aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagcccgtgcagaacagagtgtataagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaagcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggagsagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcggtgtacgagagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagcgatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggtgagatcgaccggggcaga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccacggaacgaagacannctatccggagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacntcatgtcctcacagatg
atgaaggccaccaccaacgccaccagtaagaactctcagacctgccccgggccagctggg
ctggatgatatgaagctgnttgagcagcaggcccaacagctggccgccgagnctgaacag
gacaaacccaaactcaaanagaaaatcctcttcgtcaggagtgacacatctcgcagtgag
ctggctgaactggctaaacaagccaaccctgatgagattgatattgatgatgaggatggt
gatgatgaagaccagggcccagaggaggtgcagctggaacagaagagtgtccccactgct
gtctttggagggctgaaagaaggagacgattga
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