Salvelinus sp. IW2-2015 (Arctic char): 111980860
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Entry
111980860 CDS
T05762
Name
(RefSeq) UV excision repair protein RAD23 homolog B isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03420
Nucleotide excision repair
salp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111980860
09124 Replication and repair
03420 Nucleotide excision repair
111980860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
salp03051
]
111980860
03400 DNA repair and recombination proteins [BR:
salp03400
]
111980860
Proteasome [BR:
salp03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
111980860
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111980860
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GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
CUE
Ubiquitin_4
Dsc3_N
OTU1_UBXL
RAP1
Motif
Other DBs
NCBI-GeneID:
111980860
NCBI-ProteinID:
XP_023867652
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Position
LG20:65491276..65510205
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AA seq
379 aa
AA seq
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MQITLKTLQQQTFKIDIDEEETVKTLKERIENEKGNDGFPVAGHKLIYAGKILNDDTAIK
DYKIDEKNFVVVMVAKPKAAPAAAQPSGSAATTSSSTTAPTVPTAASPGSDNPPEASKPA
EERPCSTSAPASTPTSSSGLLTNVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVVAA
LRASFNNPDRAVEYLLTGIPAGEESHAAADPVVPSVGGGTPALNTGSMTTPASVATGANP
LGFLVNQPQFLQMRRIIQQNPSLLPALLQQIGREKPQLLQQISSHQEQFIQMLNEPAQEG
GQGGGGGGGGGGGGGGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC
EKNENLAANFLLQQNFDDD
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgcagattactttgaaaaccctccagcagcagacatttaaaatcgacatagacgaagag
gagacggtaaaaaccttaaaggaaagaattgagaatgagaagggaaacgatggttttccg
gttgcagggcayaaattgatatatgcagggaaaatcctaaatgatgacactgctatcaag
gactataagattgatgagaagaactttgtggttgtcatggtggcaaagcctaaagcagcc
ccggcagctgcccagccttccggttctgccgccaccacctcctccagcactacagccccc
acagtacccactgctgcctcgccaggctcagataacccaccagaggcgtccaaaccagcc
gaggagaggccctgcagcacttcagccccagcatcaacccccaccagttcctctggtcta
ttgacaaatgtgaacatgttcgaggaggcaacatctgctctggtgacaggccaatcgtat
gagaacatggtgacagagatgatgctgatgggctacgagagggagcaggtagtggcagcg
ctcagagccagcttcaacaacccagacagagctgtggagtacctgcttacagggatccca
gctggggaggagagccatgcggctgctgacccagtggtgccctctgtgggtggaggaact
ccagctctcaacacaggcagtatgacgacccccgccagcgttgcaacaggagccaatcct
ctggggttcctggttaaccagcctcagtttctccagatgagacggatcatccagcagaac
ccctctctgctccctgccttactacagcagatagggagggagaarccccagcttctgcaa
caaatcagcagccaccaagagcagtttatccagatgctgaatgagccagcccaggagggg
ggacagggtggtggaggcggaggtggaggtggcggtggtggtggtggagtgggggttggt
ggggaggctggaagtggcatgaactacatccaggtcacacctcaagagaaggaggccatt
gagcggctaaaagccctaggattcccagaaggacttgttatwcaggcctactttgcctgt
gagaagaacgagaacttggccgctaacttccttttacaacagaactttgacgacgactaa
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