Salvelinus sp. IW2-2015 (Arctic char): 111980880
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Entry
111980880 CDS
T05762
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111980880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111980880
03041 Spliceosome [BR:
salp03041
]
111980880
03009 Ribosome biogenesis [BR:
salp03009
]
111980880
03016 Transfer RNA biogenesis [BR:
salp03016
]
111980880
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111980880
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111980880
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111980880
Complex C
U4/U6.U5 tri-SnRNP related factors
111980880
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111980880
Transfer RNA biogenesis [BR:
salp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111980880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
111980880
NCBI-ProteinID:
XP_023867692
LinkDB
All DBs
Position
LG20:complement(62634593..62696311)
Genome browser
AA seq
1050 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNDDNGEKNEPTAAKTKREADNDGTD
EVVIGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVSWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNED
VDFGWGVVVNFSKKSNVKAXTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVLPLLDPIDDMGI
KDPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKAAKRELKKARTV
LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQV
TALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPH
LMDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEKKFAD
VITKIKRDIGLLPVYICDLLYFFVTGTSTC
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaatgatgataacggc
gaaaagaacgagcccactgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgatcgggaaaaaggccaagctggagactgtctctacagaggagatcaatctt
gcagactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgctagtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtcatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
actggtgatgtcaccatcaaccccactgcctcttgccttgtcatgaccactgagatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtgtcctgggtcatctttgat
gagatccattacatgagagatgcagagcgtggcgtggtctgggaagagaccatcatcctg
ctccctgacaatgtccactatgtcttcttgtccgccaccatccccaacgccaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagcagcggaggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgtgaggcctacgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctacca
ctactgaagagaggtatagggattcaccacgggggactgctccccatcctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggtgagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggcattgtcatcttcatggtggatgagaagatgagccctgca
gtggggaaacagctgctcaagggctcagctgaccctctcaacagtgcattccacctcacy
tacaacatggttctcaacctgttgcgagtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgttgtagagaagatgggg
aagctggagaagatgtayaacgccatagagatccccaacgaggagagtgtggtcacttac
tataagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaa
cccaagtactgccttcctttcctccagcctggtagactggtcaaggtcaaaaacgaagat
gttgactttggatggggcgtggtcgttaatttctcaaagaagtcaaacgtcaaggccart
acaggtgatgcagaccctctgtacgtggtggaggtgctggtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcctgacctctatcagttccgtccgtctctacatc
cccaaagacctccggccttatgacaacagacaaagcatgctgaaatccatacaggaggtg
cagaagcgcttcccagacggagttcttcccctgctggaccccattgatgacatgggcatc
aaggacccaggcctgaagaagatcatccagaaggtggaggcgttcgaacacaggatgtac
tcccaccccatgcactctgaccccagcctggaggctgtctactccctctgcgagaagaaa
gccctgattgcaggggacattaaagcggccaagagggagctgaaaaaggctaggactgtc
ctgcagatggacgagctgaagtgcaggaagcgtgttctgagacgcctggggttcgctact
tcctctgatgtcatcgagatgaagggcagagtggcctgtgagatcagcagtgctgatgag
ctgctgctgactgagatggtgttcaacggtctgttcaacgatctgactgcagaacaggtt
actgctctgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaaactgaca
gagcagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgccaaggtg
tctgcagaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcac
ctgatggatgtggtctacacctgggctaacggatccaccttcgctcagatctgcaagatg
accgacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagagctgctgcgt
caaatgtgtcaggcagccaaggccatcggcaacaccgagctggagaaaaagtttgcagat
gttatcacaaaaatcaagagggatattggtttgctgccagtctatatctgtgatttgttg
tatttttttgtgactggaacatcaacttgttaa
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