Salvelinus sp. IW2-2015 (Arctic char): 111981002
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Entry
111981002 CDS
T05762
Name
(RefSeq) integrin alpha-1
KO
K06480
integrin alpha 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04518
Integrin signaling
salp04810
Regulation of actin cytoskeleton
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111981002
04518 Integrin signaling
111981002
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111981002
09142 Cell motility
04820 Cytoskeleton in muscle cells
111981002
04810 Regulation of actin cytoskeleton
111981002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111981002
04515 Cell adhesion molecules [BR:
salp04515
]
111981002
04090 CD molecules [BR:
salp04090
]
111981002
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111981002
Cell adhesion molecules [BR:
salp04515
]
Integrins
Integrin alpha subunits
111981002
CD molecules [BR:
salp04090
]
Proteins
111981002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_1
VWA_2
FG-GAP_3
FG-GAP_2
Cupin_7
Motif
Other DBs
NCBI-GeneID:
111981002
NCBI-ProteinID:
XP_024003533
LinkDB
All DBs
Position
LG20:62843331..62939260
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AA seq
930 aa
AA seq
DB search
MSTNVVWVRTNPKCIKLELPENTTIPNLHEVKENMTMGTTLVTNPQGGFLACGPQYGYMC
GQQTYISGVCTNVSSTFQVLNSIAPAVQECAKELDIVMVLDGSNSIWPWTSIIEFLVKFL
KNIEIGAKLSQVGIVSYGEEVTHNVNLSQFDTTQSLLAKVEKLPQQTGFKTMTALGIDTA
RKEAFTVERGARPGVKKVMIIVTDGESHDFYNLDKVIKECEEDDIERFGIAVLGDYNRNN
RSIKEVKKFIEEIQSISSDPVGDHFFNVSDEFALLNIVDALGSRIFALEATSGNYTSSFE
MEMSQAGFSAHTSKEGVMLGAVGAYEWNGTVVMHTDQGTVVPLNADFQDPLDERKESLAG
YVGYAVQSASTPNGVLYITGAPRYNHTGRVIVYKLDGESITVTQVLKGEQIGSYFGSVLQ
TVDVDQDSYTDILLVGAPMFMGPEREEQGQVYVYKLNEKGLFEHQTTLKPDNQTCCTSAH
SHGCTIVNTNGPCGARFGTAIAEVSDLDLDGNRDVAIGAPLENDHKGAVYVYHGAKKTIK
EKYVQRIPGPGDGVKTKFFGQSIHGVMDLNGDGIIDITIGGLGGASLFWSKDVAVLYANM
TFDPNKINLQQPSEDCVLGERATVCVKTRVCFNYSVKSEKDHTNLGTAIKYNLTLDSLRA
KSRAAFVNPDEKSERKVQVTANIIDALCLEHSFAMKANLDFRDPIMVSLEFGLAEDTGPV
LDGDLPTSLNKTIPLVDCGSDDKCIADLSLKAVPSIQSLVIKANKEKFHVLITIRNSQDN
AYNTKVMLSFTENINYVKVKANDKVCSLNNTKVECAVGYPFLKSNVEEVFEILFEVNPAH
VWKEIQINVTASSDSEELKTTLHDNSVRISIPVKYEAGLRFTADRHMKEDHIIVKEGEQY
PSVFNHTSVIGEEVKIIYTVKKVWIWRLLL
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaaatgtcgtgtgggtcaggaccaaccctaaatgtatcaaactggagctgcct
gaaaacacaacaattcctaacttacacgaagtcaaggaaaacatgaccatgggaacgacg
ttggttaccaaccctcaaggaggctttctggcctgtggtccccagtacggctacatgtgt
ggtcagcagacgtacatctctggggtctgtaccaacgtcagctcaaccttccaggtgctc
aactctatcgccccggctgtgcaagagtgtgccaaagagcttgacattgtcatggttctt
gacggctccaacagtatctggccctggaccagcatcattgaattcctggtcaagtttctg
aagaatatcgaaattggagctaaactgtcacaggtgggcattgtgtcgtatggagaggaa
gtcactcacaatgtcaacctcagccagtttgataccactcaatccctcctggccaaagtg
gagaaacttccccagcaaacaggtttcaagactatgaccgccctgggaattgacactgca
aggaaagaggccttcactgtggagcgaggggcgcggccgggggtcaagaaggtcatgata
attgtgacggacggagagtcacatgacttttataacctcgacaaggtcatcaaagaatgt
gaggaggacgatatcgagaggttcggtatcgctgtgcttggtgattacaacaggaacaac
agaagcatcaaggaggtgaagaaattcattgaggagatccagtcgatctccagcgatcct
gtgggagatcacttcttcaacgtgtcggatgagtttgccttgctgaacatcgtagatgcc
ctgggcagcaggatctttgccttggaggcaacgtcaggtaactacacctcgtcttttgag
atggagatgtcccaggctggatttagtgcccacacctctaaagagggtgtgatgctgggt
gctgtgggggcgtatgagtggaacgggacagtagtgatgcataccgaccagggtaccgtg
gttcctctaaacgcagacttccaagaccccctggatgagaggaaggagagcctggcgggg
tacgtgggttatgctgtacagtcagcctcaacccctaatggtgtattatacatcacagga
gcaccgcggtacaaccacacaggcagagtcatcgtgtacaaactggatggggaaagcatc
acagtcacacaagtactgaaaggagagcagattggctcctactttggcagcgtgctccag
acggtggatgttgaccaggactcctacacagacatcctgctggtgggagctcctatgttc
atgggcccagagagggaggaacagggacaggtttacgtctacaaactcaatgagaagggc
ctatttgagcaccagaccacgctgaagccagacaaccagacgtgttgtacctcggcccac
tcccacggttgcaccatcgtcaacaccaacggcccgtgtggcgcccgcttcggcaccgcc
atcgcagaggtcagtgacctggacctggacgggaaccgggacgtggccatcggggcgcca
ctggagaacgaccacaaaggggcagtctacgtctaccatggagccaagaagaccatcaag
gaaaaatatgtgcagcgtatcccaggccctggagacggggtgaagactaagttctttggc
cagtcgatccacggagtcatggatctgaacggagacggaattatagacattaccatcgga
gggctgggaggggcttctctgttctggtcgaaggatgttgctgtgctttatgccaacatg
acctttgacccaaacaagatcaacctacagcagccctctgaagattgtgtgctgggtgag
agagccactgtgtgtgtgaagaccagggtctgctttaactacagtgtcaagtctgagaag
gaccacactaacttgggcacagccattaagtacaacctgactctggactctctgagggca
aagtcgagggcagcgtttgtcaaccctgacgagaagagtgagaggaaggtccaggtcacc
gccaacatcatagatgctctgtgtctggagcattcctttgccatgaaggctaatctggac
ttcagggacccaatcatggtctccctagagtttggtctggctgaggacacaggccccgtc
ctggatggagacttaccaacgtcactcaacaaaacgattcctttggtggactgtgggagc
gatgacaagtgcatagctgacctatccctgaaggctgtgccaagtatacaaagtcttgtg
atcaaagccaacaaggaaaagttccatgtgctcattaccattagaaacagtcaagacaat
gcctacaataccaaagtcatgctcagctttactgaaaacataaactacgtcaaagtcaag
gccaatgacaaagtctgcagtctgaataataccaaagttgagtgtgctgtgggatatcca
ttcctcaaaagcaatgtagaggaggtgtttgagatcctgtttgaagtcaaccctgcacac
gtctggaaagaaattcagatcaacgtaactgcatccagtgacagtgaggaattgaagacc
accctccatgacaactctgtgagaatctccatccctgtgaagtacgaggctggactcaga
ttcactgccgacaggcatatgaaggaggaccacatcatagtgaaagagggagagcagtac
cccagcgtcttcaaccacaccagtgtgataggagaagaggtcaagatcatctatacggtt
aaaaaggtgtggatatggagactcctcctctaa
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