Salvelinus sp. IW2-2015 (Arctic char): 111981027
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Entry
111981027 CDS
T05762
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04140
Autophagy - animal
salp04148
Efferocytosis
salp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111981027
04148 Efferocytosis
111981027
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
111981027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111981027
Membrane trafficking [BR:
salp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111981027
Hops complex
111981027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
Zona_pellucida
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
Beta-prop_EML_2
TPR_GEMI5
WD40_CDC20-Fz
zf-ANAPC11
ToxA_N
Kbp-5
DLP_helical
DivIC
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
111981027
NCBI-ProteinID:
XP_023867907
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All DBs
Position
LG20:complement(32028272..32084528)
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AA seq
1009 aa
AA seq
DB search
MGVNGQQQEARFSFEAFHFVKNKNRTLSTYHLHCSTRICERTVCTSLLQNCTDNITCSRR
RREVQYTSVTNTDTVSSGPIRTQVDNGDPVRIVYEETVKDAGDNGKNFVLPVGISACDSG
RGHIVLGDMDGQIWFLTRSLQLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKV
WNLDKRDSGNPLCTRIFPAIPGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDR
HSKTLTLHEGTCPITGLAFRQQCKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRC
SALTDPSQDSQFIVAGDECVYLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNK
SEFGSRETSPSEKQILTIYDLDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEK
DTQTKLEMLFKKNLFVMAINLAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTI
RKLEPSYVIRKFLDAQRIHNLTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIK
SNESEVHFDVEIAIKVLRQAGYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRL
PFDQAESNMKRYGKTLMHHVPDGTTLLLKGLCTDYQPSRDAMERDSLDRGPAVAKKANSE
EFISVFANNPRELRAFLEHMIEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAAL
SLLRSDNTVFDKALVLCQMHNFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYG
DQEVCLWEQALGYFARKEEDCKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKD
YLINKLQRESQQIEDDERKIRQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPS
VHFLCSHSFHQHCFESYAESEAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSND
GFSVVADYFGRGVFNKLTLVTDPPGSKVGAGSLEADLQRDLLIHTKRNT
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaacgggcaacagcaggaagctcgtttctcgttcgaggccttccactttgtc
aagaacaagaacaggacgctgtccacctaccacctgcactgctctaccagaatctgcgag
aggactgtctgcacctccctgctccagaactgcacggacaacatcacctgctcaagaagg
aggcgggaggtccagtacacgtctgtgaccaacacagacacagtcagctccggacccatc
cgcacccaagtggacaatggtgatcctgtcagaatcgtatatgaagagaccgtgaaggac
gctggagataatgggaagaacttcgtcctccccgttggcatatctgcatgtgactcgggc
cggggccacatcgttcttggagatatggacggtcagatctggtttttgacacgctcccta
cagttgtcctcctttcaggcttacaaactgagagtgacccacctgtaccagctcaagcag
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatctggacaagcgtgacagcgggaatcctctgtgtaccagaatattcccagcaatt
cctgggaacaaaccaacagaggtgtcctgcctcagtgtacacgagaacctaaactttatg
gccattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacgggcctcgctttccgt
cagcagtgcaaagtcactcacttatttgttgccactctggaaaaagtccattgctacact
ttgtcggtgaaggagtaccctaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcgctcacagacccctcccaggactcccagtttattgtcgcgggggacgagtgtgtg
tacctttaccagcctgatgaacgtgggccctgtttcgctttcgacgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctacgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcatcgacgttctggcc
gaatggggctccttctacatcctgactcgggatggaaagatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagatcttcaggcagtacggt
gaccacctctacgtgaagggggaccacgatggagccatccaacagtacatccgcacaatc
aggaagctggagccctcttacgtaatccggaagtttctggatgctcagaggatccacaac
ctgacggcatacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctcaactgctacaccaagctcaaggacagctctaagcttgaagagttcatcaag
agcaacgagagcgaggtccacttcgacgtggagattgccatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgctacattggacgactt
cctttcgaccaggcagagagcaacatgaaacgctacggcaagaccctgatgcaccatgtc
cccgacggcaccacactgcttctcaagggcctgtgtaccgactaccagcccagccgggat
gccatggaaagagacagtctggacagaggcccggcggtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggagtgtatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcactg
tccttgctgaggagcgacaacaccgtatttgacaaggccctcgttctgtgccagatgcac
aacttcaaagaaggggtcctgtacctctatgagaagggcaaactgtaccagcagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtagaggcctgcaagcgctacggc
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgcaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacattgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaagac
tacctgatcaacaagctgcagagggagagccagcagattgaggacgatgagcgcaagatc
cgccagtaccgtgaggagacggcccacctccgcgccgagatccaggaactcagaagcagc
gcaaagattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcactttctgtgcagtcactccttccaccagcactgctttgagagctacgccgagagt
gaggccgagtgtcccacctgcacaccggaaaaccggaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcatgaccacttcaccagacagctgcggtgctccaatgat
ggtttctccgtggtggcggactactttggccgtggggtgttcaacaagctaaccctggtc
accgacccgccgggcagcaaggtgggggcgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacacttga
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