Salvelinus sp. IW2-2015 (Arctic char): 111981150
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Entry
111981150 CDS
T05762
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salp03009
]
111981150 (ddx55)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111981150 (ddx55)
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111981150 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
DUF1340
RestrictionSfiI
YbjM
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
111981150
NCBI-ProteinID:
XP_023868079
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Position
LG20:59827769..59832320
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AA seq
607 aa
AA seq
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MDNTTEGKWDSLPVKLNDGITQTLNELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKSVTIHCIH
GKMKHKRNKIFSEFRRLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNQGNATVFLLPMEESYVTFLSINQKCPLEQMAPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETSID
TDNIRYKDKQREKLRQKLLIELKVKREERAAAPKRHNDKNKAWSKQKNRKDRRRKTAAKR
NRDEGSEMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQVTAGPKSQRKTAAGPSEDLPS
SAGEEDK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
acgcaaactctcaatgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaggctgtgactggcagtggaaagaca
ctggccttcgtgattcccatcatagagatacttataaagcgagaggacaaattgaagaaa
atgcaggttggtgctctgatcgtcacgccgaccagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaaattccctcagttcagacagattctgttgattggaggg
agcaaccccattgaggatgtggagaagtttaaggaacagggggccaacatattgattgcc
accccggggcgtctggaggacatgttcaggaggaaggcagacggtctggatctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgcctactggatatgggc
tttgaggccagtctgaatgttatcctcgggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggaaaagctggtgagagctggtctcaggaaccct
gtacgcatcacagtgaaggagaagggcgtggccgccagctgcacccagaaaacaccagcc
aggctctgcaactactacacaatctgcagagcggaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacatgtgcgtgtgtg
gagtactttggccgagccttggaggccctgattaagagcgtcaccatccactgcatccac
ggcaagatgaaacacaaacgcaacaagatcttctcagagtttaggaggctaaagagtggt
atcctggtgtgtactgacgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcatcggtgtggacggactgcg
cgcattggtaaccaaggcaacgccacggtcttcctgctccccatggaggaatcttacgtt
accttcctgtccatcaaccagaagtgtcctctggagcagatggccccagtgagtgacgtg
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgggccatgttcgacagg
ggcatgagggcattcgtctccaccgtacaagcctacgccaaacacgagtgcagcctcatt
ttcagggtcaaagatctggactttgtcgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttccctgacttcatagaaacaagcatagac
acagacaacatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagctaaaggtgaagagggaggaaagggccgctgcccccaagagacacaacgataagaac
aaagcctggtccaaacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggaaatggacgatgaggacatgaaggagctgttgaaagacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacaggtg
acagcaggaccgaagagccagaggaagacagcagcaggcccctcagaggacctacccagc
tcagcgggagaggaggacaaatga
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