Salvelinus sp. IW2-2015 (Arctic char): 111981173
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Entry
111981173 CDS
T05762
Symbol
med13
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111981173 (med13)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
111981173 (med13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
111981173
NCBI-ProteinID:
XP_023868107
LinkDB
All DBs
Position
LG20:42352647..42459035
Genome browser
AA seq
2188 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRC
LKADVLSVWRRSQRPGRRELWLFWWGDDPNFAELIHHELTAEEDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRVGKWFVKPYEKDEKPINKSEHLSCSFPFFLHGESNVCTSVEI
NQHQPVYHLSDEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSSKDKDKHGSPSEDKMEDMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVA
PQGSSHCTTVYSGGHQVPASQRDPAISSVTLTPPTSPEEAQTVDSQSAQKWVKMSSAVDG
FSVDSTSHHEGKIPRRLASQVVERVWQECNINRAQNKRKFSATANGTCEEELMEKVGTWD
FVESAQRSHCNCSRHKSLKQRGGSIPGQPQSAGQPTHTQPPTKHKAGSDKPEKGDKQTKR
PQTPFHHRSTACDDVTKETEVAAGQRLAMRAQQAGGGFSGLRPSDSVTKPPQLHGGGVGS
GGSSSEMTGSPQPPPLSPHPCERDRGEETGDGSLKNPSTPHSQHFYQSPPEPCLAEQKGG
VGDHRGLDGLAQHFHHPHTAYPPEPLEPTVYVGSAVNLEEDGSPAPWRFFNLPRRKEAAI
PTPTLPXDKLRDRERDEASGGQEVVSVTELMATSKRPLKVSEERVQMYLQRRNQYLAAAI
TDDDDHEPEVDPYAFEDGDVKFSFSDKKDKTGGERQPGKKHKGEDGAAGLSDDAARAAAH
ARTASTSLIHETDLAVSINDLDNLFNSDEDELTPGSRRAVNGTGDKFGNKEPKPATLDPV
SCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGGLEVGQGMTNLDGTSSLGGYFKIE
VEEGYCSPKPQEIKDFSFVYKPELCQAFVGCSMFAPLKTLPSQCLPPIKMPDECIYRPSW
TTAGKQEMLNHPHVPSMAYLNKDSNIPSVGSGMDQDYSQSYTPQTHTPFMSNSAPPSNSG
TGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSPASTPSTCRPLNSVE
PATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYLSDPTGEA
QYPCTCGFSAVVNRRYGNSSGLFLEDELDIIGRDSDVSREAEKRFEALRQHSLERTGGGG
GGRGERVPDELILLLQDQCTNPFSPMAGMEPDSLAARGAGGCPVPACVRVEERDYHSDCY
MALEHGRQFMDNMSGGKVDEALVKSTCLHHWSKQNAVDISALCSQDVLRVLLSLQPVLQD
AIQKKRTVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFVVLSPFG
LPYWEKLLLDPFGSHRDVGYLVVCPDNEALLQGAKNFFRDLTAVYESCRLGQHRPISKDH
PDGIVRVGGAAAKKLAEQPVSDWFLKAASGNSDAFAKLKLYAQVCRYDLAPYLAAQPLHS
SLLAQPTPPPASSISSSMQSSGSSSTTSTGPQNSATPGGPSLPNSSGSVPSNSTGVANSA
NSAASSGSLPSSGMQSAKPSSFPPFGTMGLQNQSLDGGTQGGQLGQQAGSQNTGLPGGDS
ASQAQAPTEPLESTMEREKVGVPTDGESHAITYPPAIVVYIVDPFTYEEPEAGSSVWTLG
LLRCYLEMLQFLPPHIRNAVSVQIIPCQYLLQPVRSEERHIYAQHLKSLAFSVFSQCRRP
LPXSTNVKSLTGFGPGLAIDTALKSPERPECLRLYTPPFILAPTKDKQTELGETFGEASQ
KYNVLFVGYCLSHDQRWLLATCTDLYGELLETCIISIDVPNRARRKKGSARRSGLQKLWD
WCLGLVQMTSVPWRVVIGRLGRMGHGELKDWSILLSRRNLQSLSRRLKEVCRMCGISASD
TPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPT
SAFVQVASSNYTTDTNIDIAFNPIPDGSDAIGIFDLLDQENDLVDPDIINILPASPTTSP
VHSPGGHYHQGGDGSKGQSTDRMESHDEAPNILQQPLALGYFVSTAKAGPLPDWFWSACP
QAQNQCPLFLKASLHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCD
PATQDRRSCLPIHFVVLNQMYNFIMKML
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccactccaatctattc
tgtctggctgatctgactgggatcaaatggaagcggtacgtgtggcagggccccacctct
gcgccgatcctcttccccgtgaccgaggaggaccccatcctgtgcagcttcagccgctgc
ctcaaggcggacgtactgagcgtgtggcggcggagccagaggcccggacgtagggagctc
tggctgttctggtggggggacgaccctaacttcgcagagctgatccatcacgaacttaca
gctgaggaggacggtgtgtgggagagcggcctatcctatgagtgcaggacgctcttgttc
aaagccatccacaacctgctggagcgctgtctcatgaaccgcagcttcgtacgcgtcggc
aagtggttcgtcaagccctacgagaaggatgagaagcccattaataagagtgaacacctg
tcgtgctcgtttcccttcttcctccacggggagagtaacgtgtgcaccagcgtggagatc
aaccagcaccagcctgtctaccacctgagtgacgagcacctcaccctggcccagcaggcc
tccagccccttccaagtcatcctgagtccgtttggtctgaacgggactctgacgggtcag
tcgttcaagctgtcagaccctcccacccagaaactgattgaggagtggaaccagttctat
cccatcagccccagctctaaagacaaggacaagcacggctcgccatcggaggacaagatg
gaggacatggactgggaggacgactccctggccgctgtggaggtccttgtcggtggtgtg
aggatggtgtacccagcctgcctggtgctggtgccccagtctgacatcccggctgtggcc
ccccaggggtcctcccactgcaccaccgtctactcgggtggtcaccaagtgcctgcatcc
caacgagaccccgccatctcgtcggtcaccctgacgccccccacatcacccgaggaggcc
cagacagtggactcccagtcggctcagaagtgggtgaagatgtcgtcggctgtggacggc
ttcagtgtggacagcaccagtcaccacgaggggaagatccctcgcaggctagccagccag
gtggtggagagggtctggcaggagtgcaatatcaacagagctcagaacaagcgtaagttc
tcagcgacagccaatgggacctgtgaggaggagctgatggagaaagtaggaacctgggac
tttgtagagtcagcacagaggtcacactgcaactgctccaggcataagtctttgaagcag
cgaggtggcagcatccctggccagccccagtcagcaggccagcccacccacacccagcca
cccaccaagcacaaggctgggagcgacaagcccgagaagggtgacaagcagaccaagagg
ccgcagacgcccttccaccaccgcagtaccgcctgcgacgatgttaccaaggagacggag
gtggcggcgggccagcggctagccatgagggcccagcaagcggggggtggtttctccggc
ctccgcccctctgacagtgtcaccaagcccccccagctgcatggcggaggggtgggtagc
ggtggctcttcctcagagatgactggttccccccagccccctcccctcagcccccacccc
tgtgagcgcgacagaggagaggagacgggtgacggctctttaaagaacccctccaccccc
cacagccaacacttctaccagtcacccccggagccctgcctggcggaacagaagggtggc
gtcggggaccaccgtggactggatggcctggcccagcacttccaccacccccacacggcc
tacccacccgagcccctggagcccactgtgtacgtaggctctgcagtcaacctggaggag
gacggctccccagcgccatggaggttcttcaacctgcccaggaggaaagaggccgcaata
cccacgccaacgctgcctkgggacaagctgagggacagggagagagacgaggcctcggga
ggacaggaggtggtttctgtcacagaactgatggccacttccaagcggcctctgaaggtg
tccgaggagcgcgtgcagatgtacctccagcggaggaaccagtacctggccgccgccatt
accgacgacgatgaccacgagcctgaggtggatccgtacgccttcgaggacggggacgtc
aagttttccttctccgacaagaaggacaagacaggcggcgagcgccagcccgggaagaaa
cacaagggggaggatggagcagcaggtctgtcagatgacgcagcacgggcagccgcacac
gcacgcactgcctccaccagtctgatccatgagacagatttggctgtgtccatcaacgac
ctggacaacctcttcaactcagacgaggacgaactcacgcctggttccagacgagcggtg
aatggaacaggtgataaatttggcaacaaggaaccaaagccagccactctggacccagta
tcttgcatcagctcggcagatttgcaccagatgttccccactccccccagcctggagcag
cacatcatgggctactctcccatgaacatgggcagtaaggagtatggcggcctggaggtc
ggacagggcatgaccaacctggacggtacctcgtcccttgggggatacttcaagatcgag
gtggaggaaggctattgcagccccaagccacaggaaatcaaggacttctcgtttgtgtac
aagccagagctgtgccaggcatttgtgggctgctccatgtttgcccccctcaagaccctg
cccagccagtgtctgccccccatcaagatgccagacgagtgcatctacaggcccagctgg
accactgcgggcaaacaagagatgctcaaccacccccatgtgccttccatggcctacctc
aacaaagacagtaacatccccagtgtgggcagtggcatggaccaagactacagccagagc
tacacaccccagacccatacgcccttcatgtccaacagtgccccccccagcaacagtggc
acgggcatcctgccctcmccggccaccccgcgcttctccgcccccacaccacgcactccc
cgtaccccacgcacccccagaggacccgccagtgtccagggytcgctyaagtacgagaac
tcagacctctactcgcctgcctcyaccccctccacctgtcgaccyctcaactcagtggar
ccwgccaccgtgccctccatccccgaggcccacagcctctacgtcaccctcatcctctct
gagtccgtcatgaacctcttcaaggactgcaacttcgacagctgctgcatctgcgtgtgc
aacatgaacatcaagggggccgacgtgggtgtgtacctgagcgaccccacgggagaggcc
cagtacccctgcacctgcggcttcagcgcagtcgtcaaccgccgctacggcaacagctcg
ggcctattcctggaggatgagctggacatcatcggacgcgactcggacgtcagccgcgag
gcggagaagcgcttcgaggcgctgcggcaacactcgctggagaggacagggggaggagga
ggggggaggggagagagggtaccagacgaactgatcttactgctacaggaccagtgcacc
aaccccttctcacccatggctgggatggagcctgacagcctggcagcgcgkggggccggg
ggttgtccagtgccggcctgtgtgagggtggaggagagggactaccacagtgactgctac
atggcyctggagcacggccgccagttcatggacaacatgtcaggaggcaaggtggacgag
gccctggtcaagagcacctgtctacaccactggtccaaacaaaatgcggtggacatcagt
gctctgtgctctcaggacgttttgcgggtgctgctctccctccagcctgtactccaggat
gccatccagaagaagaggacggtgcgctcctggggcgttcagggacccctcacctggcag
cagttccacaagatggctggacggggctcctacggcacagatgagtctcctgagcccctg
cccatccctaccttcctggtgggttatgagtatgactttgtggtgctgtcgcccttcggc
ctgccctactgggagaagctgctgctggaccccttcggctctcacagggacgtgggctat
ctggtggtctgtcccgacaacgaggccctactccagggggccaagaacttcttcagggac
ctcaccgccgtctacgaatcatgtcgtctgggccaacaccgccccatctcaaaagaccac
ccagacggcatcgtgagagtgggtggagcggccgccaagaagctggcagagcagcctgtc
agcgattggttcctcaaggctgccagcggcaacagcgacgccttcgccaagctcaagctt
tacgctcaagtctgccgctacgaccttgctccatacctcgccgcgcagcctttacacagc
tccctcctcgcacagcccacaccccctcctgcatccagcatatcctcatccatgcaatcc
tccggctcctcctccaccacctcgaccggcccccaaaactcagcgacccccggaggcccc
tccctccccaacagcagcggcagcgtgcctagcaacagcacgggtgtagccaacagtgcc
aacagcgcggcatcatcagggagcctgcccagcagcgggatgcagtctgccaagcccagc
tctttccctccctttgggaccatgggcttgcagaaccagagcctggatggtggcacccag
ggagggcagctgggacagcaggctggttcccagaacacaggactccccgggggggactca
gccagccaggcccaggcacccactgaaccccttgagagcaccatggagcgagagaaggtg
ggtgtgccgacggatggagaatctcatgccataacgtaccccccggccatcgtggtgtac
atcgtggaccccttcacctatgaggagcctgaggcggggtccagtgtgtggaccctgggc
ctgctgcgctgctacctggagatgctccagttcctcccaccacacatccgcaacgctgtc
tctgtacagatcatcccgtgccagtacctgctccagccggtgaggagcgaggagcgtcat
atctatgctcaacacctcaagtccctggccttctcagtgttctcccagtgcaggcggccc
ctccccrgatccaccaacgtcaagtcactaaccggctttggccctggcctggccattgac
actgcactgaagagcccagagagaccagagtgtttgcggctatacacacctcccttcatc
ctggcgccgaccaaggacaagcagacggagctgggggagacgtttggggaggcctctcaa
aagtacaacgtgctgtttgtgggctactgcctgtcccacgaccagcgctggctcctggcc
acctgcaccgacctgtacggagagctgctggagacctgcatcatcagcatcgacgtgccc
aacagagcgcggaggaaaaaaggctctgcccggaggtcgggcctgcagaagctgtgggat
tggtgcttggggctggtgcagatgacatcwgtgccatggagggtggtgattggtcgactg
ggcagaatgggacatggcgagttgaaagactggagtattctgttgagcaggaggaacctg
cagtctctgagtcgccgtctcaaggaggtgtgtcgtatgtgtggcatctctgcctccgac
actcccagcatccttagcgcttgcctagtcgccatggagcctcagggctcctttgtcatc
atgccagactctgtgtcgacaggctcagtgttcggccgcagcaccactctgaacatgcag
acgtcccagctgagcactcctcaggacacatcctgtacccacatcctggtgttccccacc
tcagcctttgtccaggtggctagctccaactacactactgacaccaacatagatatcgcc
ttcaaccccatccccgatgggtcggacgccattgggatctttgacctgctggaccaggag
aacgacctggtggaccccgacatcatcaatatcctgcccgcctcgcccaccacctcgccc
gtacactcccccggcggccactaccaccaggggggagacggcagcaagggccagagtaca
gaccggatggagtcccacgatgaagctcctaacatcctgcagcagcccctggccctgggc
tactttgtgtccacagccaaagccggcccactgcctgactggttctggtcagcctgccct
caagctcagaaccagtgtccccttttcctcaaggcctctctgcatctccacgtgtcttca
gtgcaatcagatgaactgctgcacagcaaacactcccacccactcgactccaatcagacc
tcagacgtactcagatttgtgctggagcagtacaatgccctttcctggttgacgtgtgac
cccgcgacgcaggatcggcgctcctgtctgcccatccactttgtggtgctcaaccagatg
tacaacttcatcatgaagatgttgtaa
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