Salvelinus sp. IW2-2015 (Arctic char): 111981328
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Entry
111981328 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
3.6.4.13
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
111981328
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
salp04054
]
111981328
Pattern recognition receptors [BR:
salp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
111981328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
PhoH
Motif
Other DBs
NCBI-GeneID:
111981328
NCBI-ProteinID:
XP_023868316
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All DBs
Position
LG20:complement(72072121..72077944)
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AA seq
678 aa
AA seq
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MADLKLYEYQEEVVQRALRGENVIIWLPTGGGKTRAAVYVAKKHLENNPGAKVVVLVNKV
HLVDQHYNKEFNPYLGRDYSLVSISGDCDQKDFFGCEVKNSDLVICTAQILENALTNQEE
GKHVELSQFTLLIIDECHHTHKEGVYNKIMGRYVAQKLKGERRLPQILGLTASPGTGGAK
SIKGAVEHVLQICANLDSVIVSSKVYAPELKKKVPRPRKRFDIVDRRPQDPFGDHLKFMM
QLIHDFMALGPDFPFREFGTQEYEADVVILEKKGVTDRNRLLAQCALHLRQYNDALLIND
TVRMVDAFRVLESYYSTKSSTAMDGTDFFLLGLYQENEVELRKLSGDAQFENPKMGKLQK
TLLEQFDQGDHSRGILFSKTRKSTHCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQN
EQKDTIHNFRRGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSV
YSVVAQAGGREVRRELLNECLEDLTGRAIDEVQRMERREFQMKITDLQTEALLTRQLAEQ
LKIKKRSRFNAATVQLSCRGCFVPVAFGNDIKVIENAHHVNINPGFERYYKTGGQPALKT
FEDWEPGRVISCAACGKQWGMEMVYKKIALLPILAIENFAMETPEGRKLAKKWKSVEFEV
EEFNFTTYCHNKFPKMFD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccttaagctgtatgagtaccaggaggaggtggttcagagggctctccggggk
gagaacgtcatcatctggctgcccaccggaggaggaaagacacgggctgctgtgtatgtg
gccaaaaaacatctggagaataaccctggagctaaggtggttgtgctggtcaacaaggtt
catttggttgaccaacactacaacaaagagttcaacccctacctgggtcgggactatagc
ctggtgtctatcagtggggactgtgaccagaaggacttctttggctgcgaggtcaagaac
tctgacctggtcatctgtacagcacagatactggagaatgccctgaccaaccaggaggag
ggaaaacatgtcgagctctcacagttcactctgctgatcattgatgagtgccaccacact
cataaggagggtgtctacaataagatcatggggcgctacgtggcccagaagctgaagggg
gagaggcggctgccgcagatcctgggcctcactgcctctcctgggacagggggagccaag
agcatcaaaggagctgtggagcatgtgctgcagatttgtgccaacctggactcagtgatt
gtgtcgtctaaagtgtacgcccctgagctgaagaaaaaggtccccagacccaggaaaagg
tttgacatcgttgacagaagacctcaggacccatttggggatcacctgaagttcatgatg
cagctaatccatgacttcatggccttagggcctgactttccattcagggagtttggcacg
caggagtacgaggcagacgtggtgattctggagaagaagggtgtgacagacaggaacaga
ctgctggcccagtgtgctctccacctgcgtcagtacaacgacgccctgctcatcaacgac
actgtgcgcatggtggatgcctttagggtccttgagtcctactatagtaccaagagctcc
accgccatggatggaaccgacttcttcctgcttggactctaccaggaaaacgaggtggag
ctgaggaaactgtcaggcgatgcccagtttgaaaaccctaaaatggggaagcttcagaag
accctgctggagcagtttgaccagggtgaccactccagagggatcctgttctccaagacc
cgtaaaagcacccactgcttgtatgactgggtgtccaacaacccagcactgcagcgtgct
ggtatcagagcagccattctgactggtgctggcaatggcatcaattacatgacccagaat
gagcagaaggacacaatccacaacttccgccggggctccctcaaccttctgatctccacc
agcgtagccgaggagggcctggacatcccagaatgcaacctggtggtgcgctatgggctg
ctgaccaatgagatcgcacaacagcaggccagtggccgggctcgtgcgagtgacagcgtt
tactctgtggtggcccaggcgggggggcgggaggtgcgtcgggaactcctcaatgaatgt
ctggaggacttgactggcagggccatcgacgaagtgcagaggatggagcgcagggagttc
caaatgaagatcactgatctccagacagaagcgttgttgaccagacagttggcagagcag
ttgaagatcaagaagaggagtcgtttcaatgctgctacggttcagctctcgtgtcgaggc
tgttttgtgcccgtggccttcggtaatgacattaaagtcattgaaaacgcacaccatgtc
aacatcaaccctggctttgagaggtactataaaaccggtgggcagcccgcgctaaagact
ttcgaggactgggagcctggccgtgtgattagctgtgctgcctgtggcaagcaatgggga
atggaaatggtatataagaagattgccctgctgcccattctggccatcgagaactttgcc
atggagactccggagggaagaaaattagccaagaagtggaagagcgttgagtttgaagtg
gaggagtttaacttcaccacatactgtcataacaaattccctaaaatgttcgattga
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