Salvelinus sp. IW2-2015 (Arctic char): 111981456
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Entry
111981456 CDS
T05762
Name
(RefSeq) tsukushin isoform X1
KO
K08130
tsukushi
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111981456
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
111981456
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
LRR_EndoS
LRR_NXF1-5
LRR_14
LRR_LRWD1
LRRNT
Motif
Other DBs
NCBI-GeneID:
111981456
NCBI-ProteinID:
XP_023868494
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Position
LG20:44984338..44990608
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AA seq
359 aa
AA seq
DB search
MPGFAMSSFLGVSVWFLLVLHYVAAVMDCHPGCRCEVESFGLFDSFSLTRVDCSGVGRGH
GLVVPISIPLDTSSLDLSSSAIHTIADSMLSGPGYTTLASLDLSNNLLSRLNSSIFSRLR
YLETLDLSHNTLEELAPGCFSGLPLAEVDLSGNRLQEVSLEVFSNKGHGARPLNVDLSNN
LLNTVTTRDPQVLSPPNIQSLSLAGNRLRAVPKLQGLPLRSLSLDGNPILSIERHSFTGL
RDLAYLSLSGLSELTSIQLQSFSELSSLQVLDLSHNSRLRPLNPEVFSGLAALQELNLSN
SGVVSLPSNILHLLPSIKSIVLREKVNCWKTHRQVQFHRQIGQSTRGEELTCDVIGIVL
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatttgctatgtccagtttcctgggtgtgagtgtttggttcttgctcgtcctt
cactatgtggctgcagtgatggactgccacccgggttgtcgctgtgaagtcgagagcttc
ggcctgttcgacagcttcagcctgaccagggtcgactgtagtggggtgggccgtggtcat
ggcctggtggtccccatctccatccccctggacacctcctccctggacctgtcctccagc
gccatccacaccatcgctgactccatgctctctgggccgggctacaccacgctggccagc
ctggacctcagcaacaacctcctctccaggctcaacagcagcatcttctccaggctgcgc
tacctggagaccttggacctgagccacaacaccctggaggagctagcccccggctgcttc
tctggcttgcccctggccgaggtggacctgagcggcaacaggctccaggaggtcagcctg
gaggtcttttccaacaagggccacggtgcaagacctctcaatgtggacctgtctaacaac
ctgctgaacactgtcacaactagggatccacaggtgctaagccctcctaacattcagagc
ctcagtctggcagggaatcgtctgagggccgtgcccaagctgcagggcctccctctgagg
tctctgagcctggacggcaaccccatcctcagcatcgaaaggcacagcttcacagggcta
agggatctggcttacctgtctctcagtgggttgtctgagctcacctccatccagctccaa
agtttcagtgagctgagcagcctgcaggtcctggacctgtcccacaacagcaggctgaga
ccacttaaccctgaggtgtttagcggactggctgccttacaggagctcaacctgtccaac
tcaggggtggtgtctctgcccagcaacattctccacctcctgcccagcatcaaaagcatc
gttctcagggagaaggtaaactgttggaagacccatagacaggtgcagttccacagacag
ataggacagtcaacaaggggggaggaattgacctgtgatgtcataggaattgttttatga
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