Salvelinus sp. IW2-2015 (Arctic char): 111981617
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Entry
111981617 CDS
T05762
Name
(RefSeq) transcription factor Sox-10
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111981617
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111981617
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
111981617
NCBI-ProteinID:
XP_023868753
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Position
LG20:complement(2833146..2843331)
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AA seq
494 aa
AA seq
DB search
MSGEEQSLSELEMSPGVSDDGHSLSPGHSSSAAGGGDSPLPGPQPQLTGVGDDALSDVAG
GISIKSDEDDDRFPIGIREAVSQVLNGYDWTLVPMPVRVNSGSKSKPHVKRPMNAFMVWA
QAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKKPFIEEAERLRKQHKKDYPEYKYQP
RRRKNGKPGSGSEADGHSEGEVSQSHYKSLHLDVAAHVRGAGSPLADGHHLHTAGQSHSP
PTPPTTPKTELQSGKSGDGKREGGGAXGSRGGMGVGAEGGSGSGSGKPHIDFGNVDIGEI
SHEVMANMEPFDVNEFDQYLPPNGHPGIGQSAGSAAAAGSSASPYAYGISSALAVASGHS
AAWLSKQHQQHHASPLGSDPSKAQIKSEAGSGGHFAEASSGGSHVTYTPLSLPHYSSAFP
SLASRAQFAEYADHQASGSYYAHSSQASGLYSAFSYMGPSQRPLYTAITDPSSVPQSHSP
THWEQPVYTTLSRP
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggagaggagcagagtttatctgagttagaaatgagtccaggggtctcggacgac
ggtcactccttgtcaccgggtcactcctccagtgcagcaggcggaggagactcacccctg
cccggaccgcagccccagctgacgggggtcggcgacgacgccctatccgatgtagctggc
gggatttccatcaagtccgatgaagacgacgatcgctttcctattggtatccgcgaggca
gtgagccaggtgctgaacggctacgactggacactcgtacctatgcctgtgcgtgtaaac
tccggcagcaaaagcaagccgcacgtgaaaaggcctatgaacgccttcatggtgtgggca
caggccgcacggagaaaactggcagaccagtatccccacctccacaacgctgagctcagc
aaaaccctcgggaaactatggaggctcttgaatgagagtgataagaagcctttcatcgag
gaggcggagaggctgaggaagcagcacaagaaggactacccggagtacaagtaccagcca
cgccgccgcaagaacggcaaacccggctccggctctgaagctgacggccactcggagggt
gaggtcagccaatcgcactacaagagcctccacctggacgtggctgcccacgtcaggggg
gcggggtctcctctggctgatggacaccacctacatactgcaggccagagccacagccct
cctacaccacccaccacccccaagacggagctccagtctgggaagtcgggcgatgggaag
cgggagggtggtggagcaygtggctcccgtgggggaatgggggtaggagcggaaggtggc
tctggatcagggtcaggcaaaccacacattgatttcggcaacgtggacatcggtgagatc
agccacgaggtgatggccaacatggagccctttgatgtgaacgagtttgaccagtacctg
ccccccaatgggcacccggggattggacagagtgctgggtcagcggcagcagcagggtcc
tctgcatctccctatgcctacggtatctcctctgccctggccgtggccagtggacactct
gcggcgtggctatccaagcagcaccagcagcatcatgcctcacctctgggctccgacccc
tccaaggcccagattaagagtgaggccggctcggggggacactttgccgaagcatcctca
gggggttcccatgtcacctacactcccctcagcctgccccactacagctctgctttcccc
tcactggcctccagggcccagtttgcagagtatgctgaccaccaggcctcgggatcctac
tacgcccactccagccaggcctcygggctgtactctgccttctcctacatggggccctcg
cagaggcccctgtatacagccatcactgacccatccagcgtgccacagtcacacagcccc
acgcactgggagcagccggtctacaccaccctgtcgcggccctga
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