Salvelinus sp. IW2-2015 (Arctic char): 111981762
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Entry
111981762 CDS
T05762
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111981762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111981762
03036 Chromosome and associated proteins [BR:
salp03036
]
111981762
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111981762
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111981762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
111981762
NCBI-ProteinID:
XP_023868953
LinkDB
All DBs
Position
LG20:45598713..45621417
Genome browser
AA seq
1826 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASTGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGAATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKAAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELSKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSKAVLELLSRMSEVDSDMAD
ITQDAPGESMLEEEGESGMGEEKGSRLGTVTPTEHNPVSASSQIASSLGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVAP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGSGDKEQDQGDTGAGGFGF
LPKHAKSKQLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQ
PQSGVAALHEYVEWITDLNQEAGAGDRVLAHWALVWTLCEALWGRLGTTEPGTSGYLQQL
ERRRSFSAWLSHSATQRIEQEVGLSQGGGHVEAIFSYLTGHRISDACRLAQKSGDHRLSL
LLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVCSE
LDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSDPLDMEE
EESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTHLS
PARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESAQK
ERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCIIN
DNHEYLLEFLEGLAVPERSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERLHT
EVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIGR
LPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggggcgacgacaggtggcttcggggcctca
gcatttggggcgaccaacaacactggaggactctttggggcgacgcaaaataagccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcacg
gccagcggcacatccactagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcacggccagcaccggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggttggaggactaccaggcaggaaggaagggccccactaaccccatggct
gcaccgacggggggtctctttggggctgcggccgcagccacccccagtacgggggctgca
gggctgtttggctcctcggccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtacgggtgggtttggtgcagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagtctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcktcccaggcaggggggttgtttgga
aacacagctcagaccacaccagccactggctttgggacaggcaccgggctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcgtcgtcgtttggcacaggcaccggcctcttcggc
aacaaatccgccctcaccctcggaacaggcaccaacccatctaacttcggttttggaccc
actgctgctggcggaagcctctttgggaacaaggcggcagcaggaggactggggaccgga
ctgggagctggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaataggagcgttcggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgtcgcgctgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaagaagaaggaggagcgt
ctaaagcccaccaatccggcggcccagaaggcgttgaccacgcccactcactacaagctg
acaccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgacgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcctctccaccggagtaccccctcaacgga
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggccgag
gatgacctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagag
ctcaacgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggggaggactccatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacatcctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggac
gagctgtccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgtgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggtcatcgtctaccccgacgacaagaacaag
cctgctgagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcct
aatgataagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgcctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttctctaagtacggcctgcaggactct
gacgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccaaggctgtgctggagctgctgagtcgcatgtctgaggtggacagtgacatggccgac
attacccaggatgccccaggggagagcatgttggaagaggagggggagagcggcatgggg
gaggagaagggcagtcggctggggactgtgacccccacagaacacaaccctgtctctgca
tccagtcagatcgcctcctcgctgggaatcaaccctcacactctccagatcatgaaggca
tctctgtttgctgaggatgatgatggtgacatgttcctggagcagggaggaatgaagagc
tctctagacagggcctcccctcgcatcctcctgcctggcacccagggcaggccctccatc
ggtggtctcctgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggagggggccttcccgggaggctgtccatgtctcggccgtccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctcattcctgctgccggcccca
gcggcagaggccactgtacggacggtgggggctcgacgcctggggggccctgtggcccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtcgttccgggttggctggggtccaggctggactctggtccactgtggagacaggctg
agtgggtctggggacaaggagcaggaccagggagacacaggagctggaggttttggattt
ctgcctaaacatgccaagagcaaacaactctcagacagtccgttcaaggtggtgatcgag
caggtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggccc
ctggagatcggcctgaagcacagcaccatcagtacagagggggcctgccccttcatccag
ccccagagtggggtggccgccttgcacgagtacgtggagtggatcactgacctcaaccag
gaggctggtgccggagacagggtcctggctcactgggctctggtgtggactctgtgtgag
gccttgtggggtcggctgggtacgacagagcctggtaccagcggctacctgcagcagctg
gagaggaggaggagcttctcagcctggctgtcccacagcgcaacccagaggatcgagcaa
gaggtgggcctgagccaggggggaggacatgtggaggccatcttcagctacctcactgga
catcgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctctccctg
ctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagcttgga
gactggaacagaatgcaaacggactcattcctgcaggaggagaggctacgcatcttcgcc
ctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgttcagag
ctggactggaagcgttgtgtggcggtccacctgtggtacatgctgcctcccaccgcctcc
atcgctgatgccctggccaagtacgaagccgccttccagggctctgcagagggtcagaag
tacgcctgcgcccccctgccaccctacctcgaccaatcagacccgctggacatggaggaa
gaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatacagtgac
agacactacagcctgcaggagttgttggacccgctgacggtgacgtgggagcgtctggac
taccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctgagc
cccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgctggcctc
tgggacatggcaatctatgtactgctgcacatatctgaggayatgctccgtgagcgtgcg
gtgagggagatgctccagctccactgccctctgctggagacggaggagtctgcccagaaa
gagcgcttcctcacagaaagactactgatcccagaacagtggctccacttggccaaagct
actagagccagaagagagacagacagacacagagaggccctgcacctgtacagagcaggc
cactggaacctctgccacaggctggtcatacaacacctagcctcagactgtatcattaat
gataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgcagtgct
gtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtcatacag
accttacacgccatacaacagatggacagtgctggttataagctggaacgtctacacacc
gaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaaggaccgt
ctcgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtggtgttgagtctg
cagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatcggccgt
ctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatcatacctg
agacagctcatcgtcagctaa
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