Salvelinus sp. IW2-2015 (Arctic char): 111982394
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Entry
111982394 CDS
T05762
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111982394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111982394
03036 Chromosome and associated proteins [BR:
salp03036
]
111982394
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111982394
Coactivators
SAGA/TFTC/STAGA complex
111982394
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111982394
STAGA complex
111982394
TFTC complex
111982394
SAGA complex
111982394
SLIK complex
111982394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
Beta-prop_WDR75_2nd
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
111982394
NCBI-ProteinID:
XP_023869732
LinkDB
All DBs
Position
LG21:complement(1425335..1430293)
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTQVQVEVTSSPRTDYQLYGATGAGAAGAXTTAPNSNSSWSGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSVVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSASSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaggcagcgttgccatggggccaggaggtgagctgcgtcctgtacccgctcttcgtt
tatctccacctggacatggtgcgctgcagcctgaagggggcggtggacggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgttaacgccaaccctaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagc
gaagacaacagtaccctctgtagggccctcagcacccaagtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtatggggcgacgggtgcgggagccgccggggccgyc
accacggcccccaactctaactcctcatggtcgggagcagatggccctgagcgaggggag
gccgcaggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggtcgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgcggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagctttaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gcyggccacytagcrgacgtggactgygtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagccttcgcgcccaatgggaagtac
ctggcgtcagcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgactcacgcggacagcgcgtccagcgagctggtggggctctacacgggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgactggaacg
gcgcaggaaaaacatggacagtag
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