Salvelinus sp. IW2-2015 (Arctic char): 111982644
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Entry
111982644 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111982644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111982644
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111982644
Complex C
U5 SnRNP specific factors
111982644
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
111982644
NCBI-ProteinID:
XP_023870016
LinkDB
All DBs
AA seq
2330 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCXAGQPVKVRVSYQKLLKXYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKXDWVEVGLQVCRQGYNMLNLLIHRKNXNYLHLDYXFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKXVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTFVVVFAVFSGSVGKGPGCGFWAPGWRVWLFFMRGITPXL
ERWLGNLLARQFEGRHXKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKXNKART
ILQHLSESWRCWKANIPWKVXEIIEMRRQHIGGKECWGFIPGYCVLDSYCQKGRGSSGNV
CFKNMYCCVSQDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALER
LKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHL
VPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDV
WETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHT
NSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDTATESAHPI
RLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKH
DVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYE
EFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNT
ALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGL
GMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV
WAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQY
QVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
ASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGK
IPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSS
CADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFL
DYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKANPALYVLRE
RIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING
AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTR
KGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLK
TISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKD
LILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTR
TVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYI
LPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVHLPNQLPG
HEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCSFTPGSCTL
TAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQVSWNYNFMG
VRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
6993 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagcccaggttccagactacatgtctgaggaaaaactgcaagaaaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaggacatgccacctgagcaygtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtatacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gtcctataccacatcactggagccatctccttcgtcaacgagatcccctgggtcattgag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggac
cgtcgtcacttcaagcgtatgcgtttccctccttttgacgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgacwgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggctctcaacatggccatccccgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaatgagttcaac
gacatcaacaagatcatcatcagacagcctatcaggacagagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gtgttcatcaagaccgaggatcctgatttgccagcgttttactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaagag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggctccacgtcccttcaacttgcgctctgggagg
actaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcnncgcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagntatacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgtttcgttcctttaaa
gccaccaagttcttccagtcgactaagnctgactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctcaacctgctcatccaccgcaagaacntcaactacctgcac
ctggattacnaattcaacctcaagcctgtcaagaccctcaccacgaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagnctgtg
gtggacagccacgtgcagtacagactgggaaacgtggatgctttccagttgtcagacggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccggatgtgcaaggacctcaagcacctaatctactaccgcttcaat
acttttgttgttgtttttgctgtgttctcagggtccgtgggtaagggtccaggctgtggg
ttctgggcaccaggatggagagtgtggctgttctttatgaggggcatcacccccntgctg
gagagatggctgggcaacctgctggccaggcagtttgaaggtcgtcacntcaagggcgtg
gcgaagactgtgacgaagcagcgtgtggagtcccactttgacctggagctgcgtgcggcc
gtgatgcacgacatcctggacatgatgcctgagggcatcaagnagaacaaggccagaacc
atcctgcagcacctctctgagtcctggcgctgctggaaggccaacatcccctggaaggta
nntgagattatagagatgaggaggcaacatataggtggaaaggaatgttggggcttcatt
ccagggtattgtgtgcttgattcttactgccaaaaaggtagaggcagttcagggaatgtt
tgctttaagaatatgtattgctgtgtctcccaggatggtccatacatcacagcagaggag
gctgtggccatctacaccaccacggtccactggctggagagcagacgcttctcccccatc
cccttccccccactgtcctacaaacatgacaccaaactgctcatcctggccctggagagg
ctcaaagaggcctacagtgtgaagtccaggctgaaccagtcccagagagaggagttgggg
ctgatagagcaggcctatgacaaccctcacgaggccctgtccagaatcaaacggcacctg
ctcacacagagagccttcaaagaggtgggcatagagttcatggacctgtacagccacctg
gtgcctgtgtatgacgtggagcccctggagaagatcacagatgcctaccttgaccagtac
ctgtggtatgaggctgacaaacgacgtctcttccccccctggatcaaaccagctgacaca
gagcctcctccactcctcgtctacaagtggtgccaaggcatcaacaacctgcaggatgtg
tgggagacgatggagggagagtgtaacgtgatgctagagtctcgctatgaaaagatgtat
gagaaaatagatctgacgctgctcaacagactgctgcgtctcatcgtggaccacaacatc
gctgactacatgactgccaagaacaacgtggtcatcaactacaaggacatgaaccacacc
aactcgtacggtatcatccgtggtctgcagtttgcctcgttcatcgtgcagtactacggc
ctggtcatggacctgttggtgctgggcctccaccgggccagtgagatggctggaccccct
caaatgcccaacgacttcctgtccttccaggatacagccacagagagtgcccaccccatc
cgcctctactgcagatacatcgaccgtatacatatcttcttcaggttctcagctgatgag
gcaagggacctgatccagaggtacctaacagagcaccctgaccccaacaatgagaacatt
gtgggctacaacaacaagaagtgctggcccagagacgccaggatgagactgatgaagcac
gacgtcaacctgggtcgtgctgtgttctgggacattaagaaccgcctgcctcgctctgta
accacggtccaatgggagaacagctttgtgtccgtctacagcaaagacaaccctaacctg
ctcttcaacatgtgtggcttcgagtgccgcatcctgcccaagtgtcgcaccagctacgag
gagttcacccacaaggacggcgtctggaacctgcagaacgaggtgaccaaagagcgtacg
gcccagtgtttcctgcgtgtggatgatgagtccatgcagcggttccacaacagagtcaga
cagatcctcatggcctcaggatccaccaccttcaccaagattgtgaacaagtggaacacg
gctctgataggtctgatgacgtacttccgcgaggcggtggtcaacacccaggagctgctg
gacctgctggtgaaatgtgagaacaagatccagacccgtatcaagattggcctcaactcc
aagatgcccagtcgcttcccccctgtcgttttctacacccccaaggagctgggagggctg
ggcatgctgtccatgggacacgtcctcatcccacagtcggatctgaggtggtcgaagcag
actgacgttggcatcactcatttccggtccggtatgagccacgaggaggaccagctgatt
cctaacctgtaccgttacatccagccctgggagagtgagttcatcgactcccagagagtc
tgggcagagtacgccctgaagagacaggaggctatcgcacagaacaggcgtctgaccctg
gaggacttagaggactcttgggacagaggtatcccccgtatcaacaccctgttccagaag
gacagacacacgctggcctacgacaagggctggagggtccgcactgacttcaaacagtac
caggttctgaagcagaacccgttctggtggacccaccagcgtcacgacgggaagttgtgg
aaccttaacaactacaggacagacatgatccaggctctgggaggggtggagggcatcctg
gaacacacgctcttcaaaggaacctacttccccacctgggagggtctcttctgggagaag
gccagtggctttgaggagtccatgaagtggaagaagctgaccaacgcccagagatctggt
ttgaaccagatccccaaccgtcgcttcaccctctggtggtctcccaccatcaacagggcc
aacgtgtacgtgggtttccaggtccagttggatctgaccgggatcttcatgcacggaaag
atccccaccctgaaaatctccctcatccagatcttcagggctcacttgtggcagaagatc
cacgagagcgtcgtcatggatctctgtcaggtgtttgaccaggagctggatgccctggag
atcgagacagtgcagaaagagaccattcaccccaggaagtcctacaagatgaactcttcc
tgcgccgacatactactcttcgcctcctacaagtggaacgtctcacgcccctcgctgctc
gctgactcaaaggacgtgatggacagcaccaccacccagaagtactggatcgacatacag
cttcgctggggagactacgactctcacgacatcgagcgctacgccagagccaagttcctg
gactacaccaccgacaacatgagcatctacccctcccccaccggggtgctcatcgccatc
gacctggcctacaacctccacagtgggtacggtaactggtttccgggaggcaagcctctt
atccagcaggccatggctaagatcatgaaggccaaccctgctctgtacgtcctgagggag
cgcatccgtaagggtctgcaactctactcctcagagcccactgagccctacctgtcctcc
cagaactacggagagctcttctccaatcagatcatctggtttgtggacgacactaacgtc
taccgggtcaccatccacaagacgtttgagggtaacttgaccaccaagcccatcaacgga
gccatcttcatcttcaaccccaggacaggccagctcttcctcaagataatccacacctct
gtgtgggccggacagaaacgtctgggacagctggcgaagtggaagacagctgaggaggtg
gctgctctgattcgttcccttcctgtggaggagcagcccaaacagatcattgtcaccagg
aagggcatgctggaccccctcgaggtccacttgctggatttccccaacattgtgatcaag
ggctctgagctgcagctgcccttccaggcctgtctgaaggtggagaagtttggagaccta
atcctgaaggccaccgagcctcagatggtcctgttcaacctgtacgacgactggctcaag
accatctcctcctacaccgcgttctcccgtctcattctgatcctaagggcgctccatgtg
aacaacgaccgtgccaaggtgatcctgaagccggataagaccaccatcacagagcctcac
cacatctggcccacgctgaccgacgaagagtggatcaaggtggaggtgcagctcaaagac
ctcatcctggccgactatggaaagaagaacaatgtgaacgtggcgtctctgacccagtct
gagatccgtgacatcatcctgggcatggagatctctgctccgtcccagcagcgccagcag
attgctgagattgagaagcagaccaaggagcagtcccagctcactgccacgcagacacgc
acagtcaacaaacacggagacgagatcatcacctcaacaacctcaaactacgagacacag
accttctcctccaagacagaatggagagtcagggccatctctgctgccaacctgcacctg
aggaccaaccacatctacgtgtcgtctgatgacatcaaggagacgggctacacctacatc
ctgcccaagaacgtcctcaagaagttcatctgcatctcagacctgcgggcccagattgca
ggttacctgtacggcaccagtccccctgacaacccccaggtgaaggagatcaggtgtatc
gtcatggtaccccagtggggaacgcatcagaccgtccacctacccaatcagctgccagga
cacgagtacctcaaggagatggagcccctgggttggatccacacccagcccaacgagtct
ccccaactctccccccaggacgtcaccagccacgccaagatcatggctgacaaccccgcc
tgggacggagagaagaccatcatcatcacctgcagtttcactcccggctcctgcactctg
acggcctacaagctgactcccagtgggtaygagtggggcagacagaacacagacaagggc
aacaacccaaagggctacctgccctcccactatgagagggttcagatgcttctgtctgat
cgcttcctgggcttcttcatggtgcctgggcaggtctcctggaactacaacttcatgggt
gttcgccacgaccccaacatgaagtatgacctgcagctgtccaaccccaaggagttctac
cacgaggtccatcggccctctcacttcctcaacttcgcctccctgcaggagggagagatc
tacaacgcagacagagaggacatgtacggttaa
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integrated database retrieval system
