Salvelinus sp. IW2-2015 (Arctic char): 112068010
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Entry
112068010 CDS
T05762
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112068010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
112068010
03036 Chromosome and associated proteins [BR:
salp03036
]
112068010
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112068010
Coactivators
SAGA/TFTC/STAGA complex
112068010
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112068010
STAGA complex
112068010
TFTC complex
112068010
SAGA complex
112068010
SLIK complex
112068010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
112068010
NCBI-ProteinID:
XP_023990761
LinkDB
All DBs
Position
Unknown
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCILYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGAPGAATTAPNSTSSWSGADGPERGE
XAGVEVXTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDNSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSIAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacacggaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctc
tcagaagcggtgttgccatggggccaggaggtgagctgcatcctgtacccgctcttcgtt
tacctccacttggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttcctcgaccac
aagtatgtggtgaacctgacagagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcactgactaccagctgtacgggacgacgggtgcgggagctcccggggccgcc
accacagcccccaactctacctcctcgtggtcgggcgcggatggccctgagcgaggagag
gyggcgggggtggaggtccycacagggatcccgcagagcgaggccgccctggaggcmctg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcacaaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacaactcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgcctagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagatagctcgggcctgctatcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggaygtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gccggccacytagcggacgtggactgygtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtccatagcctttgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccaacgggtgaagctgtgggacttggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacgggacgacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag
DBGET
integrated database retrieval system
