Salvelinus sp. IW2-2015 (Arctic char): 112068699
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Entry
112068699 CDS
T05762
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112068699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
112068699
03009 Ribosome biogenesis [BR:
salp03009
]
112068699
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112068699
Spliceosome [BR:
salp03041
]
Complex A
U2 snRNP components
U2 related factors
112068699
Complex B
112068699
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112068699
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
90S particles
Helicases
112068699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
112068699
NCBI-ProteinID:
XP_023991665
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDHSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVVPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgatgaccactcaaataaaaagagatctgat
ggaaaagacagagatcgcgacagggaccgtgacgagcgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagggatgtgaagccctctgtcgtgccccccaacacc
atgatggccgggggaggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccgttcacaaacctgccccacacgccgcgctactatgagatcctgaagaagaggctgcag
ctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgccaccagagcttc
gtgctcgtcggagagacgggctccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggcttgggcggccccaagaaggcagtggcttgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggccgacgagatggacgtcatgctgggccaggag
gtgggctactccatacgatttgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtatggcgtg
atcatcctggatgaggcccacgagagaacgctggccacggacatcctaatgggagtcctg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctgaccattcccggacgcaca
caccccgtggagatcttctacacccccgagccggagcgggattacctggaagccgccatc
cgcacggtcgtgcagatccacatgtgtgaggaagaggagggggactgtctgctgtttctc
accggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagattgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcctccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcaataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccatcgacggagtggtgtttgtg
atcgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcagcaaagggcgggccgcgctggraggaca
cggccagggaagactttccgcctctacactgagaaagcctacaagaccgagatgcaggac
aacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggacccaccagccccggagaccctg
atgcgggcgctggagctgctcaactacttggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccgttggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtccagctacacccatctactgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccaccaagaactacattcgcacctgctcggatatcaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgtgaagcc
aagaggcagttggagcgaattgttgccaaactccagacaaaggagtattcccagtactga
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integrated database retrieval system
