Salvelinus sp. IW2-2015 (Arctic char): 112068840
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Entry
112068840 CDS
T05762
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112068840
09122 Translation
03013 Nucleocytoplasmic transport
112068840
03015 mRNA surveillance pathway
112068840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
112068840
03041 Spliceosome [BR:
salp03041
]
112068840
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112068840
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112068840
Spliceosome [BR:
salp03041
]
Complex C
Other components
EJC/TREX
112068840
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112068840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
112068840
NCBI-ProteinID:
XP_023991824
LinkDB
All DBs
Position
Unknown
AA seq
375 aa
AA seq
DB search
MTEQDVENELLDYEEEDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactatgaggaggaggatgtggtggga
gatctatcaggaggggacattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgagtgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccacactacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcgtttcagatcagcaaggagtatgagagattctccaagtacatg
ccgactatcaaggtggcagtgttctttggtggcctgtctataaagaaggacgaggaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaatcctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaacttgacatgcgccgagacgtccaggagatattccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagctgttggttgagcagaacttcccggctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacaatttaaagacttccagagacgtatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccagaagactctgacacgtacctgcacagatattaa
DBGET
integrated database retrieval system
