Salvelinus sp. IW2-2015 (Arctic char): 112068951
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Entry
112068951 CDS
T05762
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04518
Integrin signaling
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112068951
04518 Integrin signaling
112068951
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112068951
09142 Cell motility
04820 Cytoskeleton in muscle cells
112068951
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
112068951
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
112068951
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112068951
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112068951
Hyaluronan
Extracellular matrix or blood plasma proteins
112068951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
STALD
Motif
Other DBs
NCBI-GeneID:
112068951
NCBI-ProteinID:
XP_023991954
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MDSLSDRTPVHLHTQRHHGRSTEGLPVAVGPPGLCPGPRIRPLASEARNINDEKDDCPVN
VYFTIDTSESVALREFPWGSLVEELKVFLQMFVERLQTTTLRAKRVQWAYGGLHFSDRVE
VFSQVVTDAAVFLGGHSHQVHYSASQSATVVSTLVGVPSSTVPEEHDRAGEANGQGKARI
QYAVVLTDGHITGSPCGGVSRAAEAAKAAGIKIFVVATNEETMESELKQIASSPVAWPRR
DLVGQSEILDSLGHRERLAPLGHLDVKETLACREKPVLPVTLVSRVTRASQVKRVLLGRV
AGLDHRVMVETVEIRVKLDLVEVLAALENSAQRGGHQVSQGSVVYQVRVERQDFRALRGM
QGTLAPEETLEQQELREYLVGLSVSNRLYLFILIDRYLSYPCLSERMLMNILNFQECEIM
GFVRETCGCCDCEKVCPPLDLVFVIDSSESIGKTNFSLAKHFVISVANRLGKMARNISDV
SGFRLGVVQYSHQGAVQAIRMDDRGITSATSFNTKVKAMEWIAGGTWTPSALKYTYDHLI
VPGRRGRTKTVAIVITDGRYDPKDLDNLGALCNGVDVYAIAIGDMFDSGAERQNMERIAC
NMGDRVKTLSVYAELTAEEFLEEIEQILCPEPEMMCPDLKCASDLSLAPLIQRPADILFF
IDGSERTGGRNFISILRFIERLSQSIPLSKEVSSGARFAVLQFGGEQDPEVLLDFSNNHR
KISSLVSNAVYRDSSSTLGSAILYATENLVSNPGGRFRGVRPDAELAFVFITDGVTSDKN
FAEGIGAMRRANAVGVAITVGSDIDRERLLQLTLRDKALIFNLKSFNDLALPGVVKHMAH
CLG
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggacagtctatcagatcggacacctgtacacctccacacacagaggcatcatggcagg
agtactgaaggccttcctgttgctgtgggtcctccaggtctctgcccaggacccagaata
cgaccacttgctagtgaggccaggaacatcaatgacgaaaaggacgactgccccgtcaac
gtgtacttcaccatagacacctctgagagtgttgctctgagggagttcccctggggcagt
ctggtggaggagctcaaggtgttcctccagatgtttgtggagaggctccagaccaccacc
ctcagggccaagagggtccagtgggcctacggtgggctgcacttctcagaccgcgtggaa
gtcttcagccaggtggtcactgatgctgcagttttcctgggagggcacagccatcaggta
cattactcagccagccagtcagccactgtcgtcagtacattggtaggggtaccttcatcg
actgtgcctgaggaacatgacagagcaggtgaggctaacggccaggggaaggcccggatc
cagtatgctgtggtcctgactgacggccacatcactggcagcccctgtggaggcgtctca
cgggccgccgaggctgccaaggcagcaggcatcaagatctttgtagtggccaccaacgag
gaaaccatggagagtgagctcaagcagatcgccagttctcctgtggcgtggccgcgaagg
gacctggtgggccaatcggagatcctggacagcctgggccaccgggaaagactggcacca
ttgggrcacctggatgtaaaggagacgctggcatgccgggagaagccggttctgccggtg
actttggtatcaagggtgacgcgggcaagtcaggtgaaaagggtgttgctgggcagagtg
gcaggcctggaccacagggtgatggtggagacagtggagataagggtaaagctggacctg
gtggaagtcctggcggcactggagaactcggcccagaggggggggcaccaggtttcccag
gggtccgtggtctaccaggtgagggtggagaggcaggacttcagggctctcagggggatg
caggggactttggcccccgaggaaacactggagcagcaggagctaagggagtacctggta
ggtttatcggtaagtaacagactttatttgttcatcctgattgacagatatctttcatat
ccctgtctctctgagagaatgctgatgaatattctcaactttcaggagtgtgaaatcatg
ggatttgtcagagaaacatgcggctgctgtgattgtgaaaaggtttgccctcccctggac
ctggtgtttgtgattgacagctctgaaagtattggaaaaaccaacttcagcctggctaaa
cactttgtcatcagtgtagcaaacaggcttgggaagatggccagaaacatctctgacgtc
tcagggtttcgtctgggtgtggttcagtacagtcaccaaggggcggttcaggccatcagg
atggacgataggggcatcacctctgcgacctccttcaacacaaaggtcaaagccatggag
tggatcgctggaggcacctggactccctctgccctgaagtacacatacgaccatctgata
gtaccaggtcgcagggggaggaccaagacggtggccatagttatcacagacggtcgctat
gatcctaaagacctggataatcttggagccctgtgtaacggggtggacgtgtatgccatc
gccatcggtgatatgtttgactctggggcagagaggcagaacatggagaggattgcctgt
aatatgggcgaccgggtgaagaccctgagtgtctacgctgaacttactgctgaggaattc
ttagaggaaatagaacaaatcctctgcccagaaccagagatgatgtgtccagacctgaag
tgtgcctcagatttgagtttggctccactgatccagcgccccgcagacatcctcttcttc
attgacggttctgagagaacagggggcagaaacttcatcagcatcctgcgcttcatcgag
agactctcccaatccatccctctctccaaggaggtctcttcaggagctcgcttcgccgtc
ctgcagtttggaggggagcaggacccagaggttcttctggacttctccaataaccacaga
aagattagctccctggtctctaatgcagtctaccgcgactcatcctccactctgggcagc
gctattctctacgcaactgagaacctcgtcagtaaccctggaggtcggttcagaggggta
cgtccggacgcagagctcgcctttgtgttcattacagacggagtgacctcagacaagaac
tttgctgagggtattggagccatgagaagggccaacgcagtgggtgttgctatcacagtg
ggatcagatattgacagggagcggttgctgcaactcactctaagggacaaagctcttatc
tttaacctgaagagtttcaatgacttggccctccctggggttgttaaacacatggctcat
tgcctaggttaa
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