Salvelinus sp. IW2-2015 (Arctic char): 112069865
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Entry
112069865 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-6-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
112069865
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112069865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
UbiD
MoCoBD_1
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
112069865
NCBI-ProteinID:
XP_023993015
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MSSKQATSXFASVADGEEAMSQDHLSWDKEESAEAHGSPSCPCSLLHSKGSMDELQPLSS
VLQXSDWDSMVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGARERGDLLADLRSGTPE
RRKGSLADVVDTLKQKKLEEMTKTEQDESSCMETLLSKDWKEKMDRLDTSDLLGEVKGTP
ESLVEKEHQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQIARQQ
QQLLQQQHKINILQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGISYKPGD
NYPVQFIPSTMAAAXASGLSPLQLQQLYAAQLASMQVSPGAKMPPLPQPPNNSGPISPSG
LKNDKRSSSPITQVKEEGTQPLNLSARPKTAELVKSPTSPTQSLFTGSKTSPNSLSKSGI
PSPLGGMGRGSSLDILSSLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAK
LSALTGMGLNNCSRADKERAHFESLGHHLSKLGEDGKIGHRVIDLTRPEDLDGWKALNGS
GTGADKPQQYYCWPTGGASTAEARVYREARGRNSNEPHIKRPMNAFMVWAKDERRKILQA
FPDMHNSNISKILGSRWKSMTNQEKQPFYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDG
KKLRIGEYKQMMRSRRQEMRQFFTVGQQPQIPISTSAGVVYPGAITMATTTPSPHMTSEC
SSASASPEPAIPVIQSTYNMKIEPSAMLTNDPIINGEVDEMDMYEDFDEEPKSDYSSETE
TLEPIVSAN
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctncgtttgcctccgtcgccgatggggaggaagccatg
agtcaggaccacctgtcctgggataaggaggagagtgcggaggcccacgggagccccagc
tgcccctgcagcctgctccacagcaagggctccatggacgaactgcagcccctcagcagt
gtcctccagnagagtgactgggacagcatggtgtcagcccagcagcgcatggaatctgac
agcaataaagtatgttccctgtactccttccggaataactcaacctccccacacaagcct
gaggagggggcccgggagcgcggcgacctgctggcggatctgcgttcgggaacgccggag
cgccgcaaaggaagcctggccgacgtggtggacacactgaagcagaagaaactggaggag
atgacaaagacagagcaagatgaatccagttgcatggaaacacttctgtcaaaagactgg
aaagagaagatggacaggctcgacackagtgatcttctgggagaagtcaaaggtactcca
gagagcctggtagagaaagagcaccagctgagcaccatgatcactcagctgatcagcctg
agagagcagctcctggccgctcacgatgagcagaagaagctggccgcctcacagatggag
aaacagaggcagcaaatggagctggcccgccagcagcaggaacagattgccagacaacag
cagcagcttctgcagcagcarcacaaaatcaatatcctycagcagcagattcaggtccag
ggtcacatgcctccgctcatgatcccyatttttccacacgaccaacgaaccctggcagca
gccgccgcagcccagcagggctttctcttcccaccgggaatatcttacaagccaggtgat
aactacccggtgcagttcattccatccacaatggcagctgcgrcagcgtcaggactcagc
cccctccagcttcagcaactgtatgccgcccagcttgccagcatgcaggtctctcctgga
gccaagatgccgccactcccccagcctcccaacaacagcgggcccatctccccctccggc
ctgaagaacgacaagagatcctccagccctatcactcaagtcaaggaggagggaacgcag
cctctcaacctstccgcccggcccaagacggcagaactggtcaagtcccccacgtccccc
acacaaagcctgttcacaggcagcaagaccagccccaacagcctgtccaagagcggcatc
cccagtcccctcggaggcatgggccgtgggtcttctctggacatcctgtccagcctgaac
tccacagcgctgttcggggaccaggatgcggtgatgaaggccatccaggaggccaggaag
atgagagaacagatccagagagagcagctgcagcaccaccagcagggcatggaggccaag
ctctctgccctcacaggcatgggcctcaacaactgcagcagggctgacaaggagcgggca
cactttgagagccttggtcaccatcttagcaaactgggcgaggatggcaaaattggccac
agagtcatcgacctcaccaggccagaggatctggatgggtggaaagctctgaatggctct
ggtaccggagcagataaaccacaacagtattattgttggcctacaggaggcgccagcaca
gccgaggcacgggtctacagggaagcccgggggaggaacagcaacgagccccacatcaag
agacccatgaacgccttcatggtgtgggccaaagatgagcgccgcaagatcctccaagcc
ttcccagacatgcacaactccaacatcagcaagatcctgggctctcgctggaagtctatg
accaaccaggagaaacagccgttctatgargagcaggcccgtctcagtaagatccacctg
gagaagtaccccaactacaagtacaagccccggcccaagaggacctgcatcatcgacggg
aagaagctccgcatcggcgagtacaagcagatgatgcgctcgcgacggcaagagatgagg
cagttcttcactgtggggcaacaaccgcaaatccccatcagcaccagcgccggcgtggtc
taccctggggccataaccatggcaacgaccacaccctcccctcacatgacgtctgagtgc
tccagcgcctcagcaagcccggagccggccattcccgtcatccagagcacctacaacatg
aagatagagcccagtgccatgttaaccaacgaccccatcatcaacggagaggtagatgag
atggacatgtacgaggactttgacgaggagcccaaatcggactacagcagtgagactgag
acactggagcccatcgtcagcgccaactga
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