Salvelinus sp. IW2-2015 (Arctic char): 112070779
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Entry
112070779 CDS
T05762
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112070779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
PET
FlgT_N
Motif
Other DBs
NCBI-GeneID:
112070779
NCBI-ProteinID:
XP_023993999
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MSSSGSSFFTGSLTGGSSSVFVSSSKGAGPGGGGFVTGSSSGSSSGTGIGGGDSSSAKMS
AGGFGSVAVSTVTRSNYSSSAGAGSGGVKRGGAQRSASSSVSFSPTPMERKSMTTTMTSR
SMGYEGRSSGNSSPEYTRREYAAASAAASTPSRGRSHSRESEIRCRLQSASPTAKRWTEL
DDVKRLLKGSRSSSISPPRSPTSTLPIPRKASVETRTMPNSSQSGQYDSATLDSGMPSYV
WSGPTAGGYGYHSNTINLSPTSTLQHSPTTLTATGLQNNLALSSTSMNSGLSASSTVHGM
QNNLATATGGILTANGVNAQTVYGVQKNVTSTGVSTTTVAPNSPTSEEAKEYKFMLLEKE
NAPVKKETERLIMAKDTGKQFSSADTAIAYSEDSLKKEKKKASSFVETATAGTTETNVIR
KDESGGGLGFWSCCSWWKWLLGLLLGLLLLLGLLLGLIALAEEVKRLKARVDALEQASSS
SSAHSSRLSSSSAXNIIDPLESAYIDKTSSPSSTTLLRSDNGINLGVATGAGPGSANGPG
HDPVALQRAVQQIVRTELQSDTVRATLADSMKGARGEPGTKGDQGGPGVKGDNGFPGQPG
PPGQMGHSGQEGPRGPKGSAGEAGAEGSPGQKGREGPTGSRGEPGPPGFGEKGDKGSPGE
PGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGNKGE
PGEKGPRGTSGDPGQRGLPGPDGANGSKGPGGAPGADGEKGSRGENNSIIL
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagctccggttccagttttttcactggttctcttactggtggttccagttctgtt
tttgtctctagttcgaaaggagcaggaccaggagggggcggttttgtcactggttccagt
tctggttctagttctggtaccggaattggaggaggggattcttctagtgccaaaatgtcg
gccggcggctttggttctgtggctgtttccacggttaccaggtccaactacagctcctcg
gcaggcgcgggttcagggggcgtgaagaggggcggggcacagcggtctgcatcctcttct
gtcagcttctcccccacccccatggagagaaagagcatgaccaccaccatgacctcacgc
tccatgggctacgaaggaagatccagtggaaactcatctccggaatacacaaggagagaa
tatgctgcagcaagtgcagctgccagtacaccctccagagggcggagccacagcagagag
agtgagatcagatgcagactgcagagtgcctctcccacagccaaaagatggacggagctg
gatgatgtgaagcggctgctgaaggggagtcgctccagcagcatcagcccccctcgctcr
cccaccagcaccctccctatccccaggaaggccagcgtagagaccagaaccatgccaaac
agctcccagtcaggccagtacgacagcgccaccctggactcaggaatgccttcctacgtg
tggtcaggccccacggctggaggctatggttaccacagcaacaccatcaacctgtccccc
acctccaccctccaacattcacctaccacactcacagccacagggcttcagaacaacctg
gccctcagctctacatccatgaactctggactctctgcctctagcactgttcacggtatg
cagaataacctggccaccgccactggcggtatcctaacagctaatggagtcaacgcacaa
acagtctatggtgtgcagaaaaatgtcacaagcacaggggtgtccacaaccacagtggcg
cccaacagtcctaccagtgaagaggccaaagaatacaaattcatgctgctggagaaagag
aacgctcccgtcaaaaaggagacggagagactcatcatggccaaagatactggcaaacag
ttctcctctgctgacactgctattgcctattctgaggactcactgaagaaggagaagaag
aaggcgtccagctttgtggagacagctacagccggaaccacagaaactaacgtgatacgt
aaggacgagtctggaggaggtctgggcttctggtcctgctgctcctggtggaagtggctg
ctgggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatcgccctg
gccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaacaagcctccagctct
tcctcagcccattccagtcgcctctcctcctcctcagccatraacatcatagaccctctg
gagtctgcatacatagacaagacctcctctccctcctctaccacactgctccgctctgat
aatggtatcaatctgggagtggcaacaggagcaggtccaggatcagctaatggaccaggc
catgaccctgtagctctgcaaagggcagtacagcagatagtcaggactgagctgcagtcc
gatactgtacgagcaacacttgcagactcaatgaaaggagcgagaggagagcctgggacc
aaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccctggccaaccaggt
cctccaggtcagatgggtcacagtggacaggagggcccgaggggacctaaaggaagtgca
ggtgaagctggtgcagagggctccccaggccagaagggccgagaaggaccaacgggatca
cgtggagagcctggtcctccagggtttggagagaaaggggacaaaggttctccaggtgaa
cccggaggccccggacctgctggcactgctgggcctgttgggcctaaagggtcagtgggt
ggtcagggtgctacaggtatcccaggaactcctggtccacagggtttccgaggtgaagca
ggcgctccaggaccaaaaggagagaagggaccagctggacctccaggaaataagggcgag
ccaggagagaaaggaccccgcggaacatcaggtgacccaggtcaaagaggacttccagga
ccagacggagcaaatggatccaaaggacccggaggtgctccrggggctgacggtgaaaag
ggttctagaggtgagaacaacagcatcattttgtag
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