Salvelinus sp. IW2-2015 (Arctic char): 112070826
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Entry
112070826 CDS
T05762
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112070826
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112070826
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
112070826
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112070826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
112070826
NCBI-ProteinID:
XP_023994042
LinkDB
All DBs
Position
Unknown
AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISLVRCQEEDDQEAGSCIQDAHRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVFGAKGQKGAPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGNPGPPGPNGTPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGSPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGTRGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGTPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGSPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGARGAQGAAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGATGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPTGKDGSNGTPGPLGPSGPRGRSGET
GPAGPPGNPGPPGPPGSPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNLGSTADAIKVFCN
METGETCVYPSIAKVPHKNWWTSKSKERKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQNLTYHCKDSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatcccttgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccatcgctataacgacaaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgcccccact
gaggcggtgtttggtgctaagggccagaaaggggcaccaggcgagattgcagatgttgta
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaaaccctggccctcccggacccaacggaaccccaggtcttggc
gggaacttcgctgctcagatggctggtggattcgatgagaaagctggaggcgcacagatg
ggagtgatgcaaggccctatgggccctatgggtccccgtggttcacctggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgat
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat
ggatctaagggagagggtggtgctgctggagccaagggtgagggtggcgctcccggagag
aatggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
ccttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct
gggcctgtcggacctgctggagcacctggtttccctggatctcctggttccaagggagaa
gctggccccaccggtacccgtggaactgaaggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatccct
ggagctaaaggatctgctggcgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggcaaaagaggagcaagaggagag
ccgggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggatggtcttgctggtgctaagggaacccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggcgaccccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt
cctggtggtgctgctggggaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag
gcaggagagaagggtctcgtaggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgctggacccaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggctccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggcgctacggga
cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggatctcagggtctgcag
ggacctcgtggacttcccggaactcccggaaccgatggacccaagggagccattgggcca
acgggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggtggtatcctcggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag
ggcgctcctggaaaggacggttccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgctgctggt
gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggcgtttctggatctaaaggagcccgcggtgcccagggtgccgctggtgctact
ggtttccctggtgctgctggaagagttggatctcccggtcccaacggtaaccctggtgct
gctggccccgctggccctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagacgctgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggagaagatggtccccctggtcctgatggtccttcaggtcctcatggtctg
gctgggtctcgtggtattgtcggtctgcctgggcagcgtggagagaggggcttccctgga
cttcctggaccttctggagagcccggtaagcagggagctactggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga
gagggcaacgctggatctgatggacccccaggtagagatggatccactggggtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccaggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggccggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgcggcttcact
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagtcggtcccactggtaaggatgga
tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtcctgctggtccccctggtaaccccggaccccctggtcctcctggttctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagcctgagaagtctccggatcccttg
aggtacatgagggctgatgaggcgtccagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagcggt
gactactgggtggatcctaaccttggcagcacagctgacgccatcaaggtcttctgcaac
atggagactggcgagacctgcgtgtaccccagcatagccaaagtaccgcacaagaactgg
tggacaagcaagagcaaggagcgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcttg
aggctgctgtccacggaagcgtctcagaacctcacctaccactgcaaggacagcgtggct
tacatggacgcgtccacgggcaacctgaagaagggtctgctgctccagggctccaacgac
gtggagatcagagctgagggcaacagccgcttcacctacagcgtggtggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggatatcggaggagcggaccaggagttcggt
gtggacgtgggcgcagtctgcttcttgtaa
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