Salvelinus sp. IW2-2015 (Arctic char): 112071376
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Entry
112071376 CDS
T05762
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112071376 (lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
112071376 (lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
112071376 (lsm2)
03041 Spliceosome [BR:
salp03041
]
112071376 (lsm2)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112071376 (lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
112071376 (lsm2)
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112071376 (lsm2)
Complex C
U2 snRNP components
112071376 (lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
112071376
NCBI-ProteinID:
XP_023994601
LinkDB
All DBs
Position
Unknown
AA seq
108 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNELSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
SVIFCHQLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcatttttcaagtccctggtggggaaggacgtggtggtggagctgaaa
aatgarttgagcatctgtggaacacttcactcggttgatcagtacctgaacattaaactg
acagacatcagtgtcacggatccagagaagtatccacacatgttatcagtgaagaactgt
tctgttatcttctgtcaccagttatcagtgaagaactgtttcatccgaggctctgtggtg
cgatacgtccaactacctgcagatgaggtcgacactcagctgttacaggacgctgcgcgc
aaggaggcactgcaacagaagcagtga
DBGET
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