Salvelinus sp. IW2-2015 (Arctic char): 112071978
Help
Entry
112071978 CDS
T05762
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
112071978 (taf1c)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
112071978 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
112071978
NCBI-ProteinID:
XP_023995154
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MDYNFPQKLFPVYFNSGPPSSTFRHNVGGWGSYGQVLEVNVALHENDVSLPKVDWKFESQ
HQVKGETWVPVEPIAIPLLRPKRGHKWSSTALSDPLDFSEQMQNFYQYKYKDAFCTMSHI
LGDNFHFRQGRRKASERNAVHMWQMKRFMHTFKYKKCELTHLERQAKRYHNLLSDVIHDI
PPALLADHLHEELTYQRGQEQFSDHATGGAIGYISFTNTSISQQGCLVYPGKAGLNKLNF
HRVVLEFQEGKPPCFDVSHKPLSFQLNGTIRQITIGLQQDECHVGVRCDYLCGVWKVSEK
DIPKTLEVIQTKQPATCLSASPHVLGEXLVTSESGAAYLWTVGKGLQKFRQEYSNLYFNS
KSSWRWCDFSGHPRVMVYADRTGVELTDIRTKDHCSHTLFRIGQTPDCKSGERVILSNYL
RDVHTFHHLVTTQHSAYVMDERFPCLPMIQWDHMMEHPPMFAQVVAGLPSGGGTTKVLLG
SQRSQEVILLQYSGGREEACVTRGPPRALLSPRDSLGHLPVQLPHRQHHAQDRLANPAAG
LTVIHQSQAKEDCICVLQLTEAGDIFYHTLKSQTESFSKDDPPAPTQNSVGPEGRSGDVQ
RLKQPVETLRKQPHQTLGTSRSSALGETWYSSGPQSPADDSGFEGRGQPWDTPRAGLEMV
INNPHDDPYLTLATNTGLTDTQETAATAPLPTVQSLDTNVNINPVSPKAKVSDEALLVWR
KWILKLFKCPRKRRXLPHKTTKTKYLLPDDSLQKDPLEDHCRRTLRKDLRETMRNGHVLV
HRNTCLKPLALVPVPAPVEPSEWADVLSERMSASWEPGLGGWRSWWEERLGLNREEKVKA
LRRKRRRQKQAKAHSRIDLSGSFTSSVSYQSDLDSASLSGWSSAASQYASSDGDSAAKSC
YNTKWATLSEPGTPRATTPTPQTSNSQPTTPHRVFGSKPTTPLKQLSSFLSQPTIPYSQS
SSSSLPTIPYSQSSSSSLPTIPYSQFTSSEPLFTPQKQPTVGKLLPWTTVGSDSSAAGIL
RTVVATQKPKPQNQDYLNSLFGSQEPMDASQGVGFNESRHHTPLATSSQLSSISTSQRNL
KVGLTSSQPKRKKSRMGF
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggattacaatttcccacagaaacttttcccggtttatttcaactctgggccccccagt
tctacgtttagacataacgtcggaggttggggttcgtatggtcaagtgttggaagtcaac
gtcgctctacacgagaacgacgttagtctaccaaaagtagattggaagttcgaatctcaa
caccaagtgaagggagagacttgggtgccagtggaaccgatagcaataccacttctgcga
ccaaaaagaggccacaaatggtcatcaacagcactgtcggatcctttggatttttcagag
caaatgcagaacttctaccagtacaagtacaaggatgcgttttgcacaatgagccacatc
ctgggggataacttccactttagacaggggaggagaaaggcaagtgaaagaaatgctgtt
cacatgtggcagatgaagcgcttcatgcacacatttaaatacaaaaagtgcgagttaact
catttggagcggcaggccaaaaggtaccacaacctgttatcagatgtgatccatgacatc
cctccagccctgctagctgatcatctccatgaggagctgacctatcagagagggcaggag
cagttctctgaccacgccactgggggtgccatagggtacatttcctttaccaacaccagt
atctctcagcaaggctgtctggtgtaccctgggaaagctggccttaacaagcttaacttc
cacagggtggtgctagagtttcaagaagggaagcctccatgttttgatgtgagccacaag
cctctctcattccagctcaatggtacaatcagacagatcaccattggccttcagcaggat
gaatgtcacgtgggggtgcgctgtgactacctgtgtggtgtctggaaggtcagtgagaag
gacatccctaagactttggaggtcattcagaccaagcagccagctacatgtctcagtgcc
agtccccatgtccttggagagyttctggtgaccagtgagagtggagctgcctatctatgg
acggtggggaaaggtttgcagaagttccgtcaggagtacagtaacctgtacttcaattct
aagtcgtcatggagatggtgtgacttctctggccaccccagggtgatggtgtatgctgac
cggacaggtgtggagctcactgatatcaggaccaaagatcattgcagccacacgctgttt
cgtatcggccaaactcctgactgtaagagtggcgagagagtcatcctgtccaattacctg
agagatgtccacaccttccaccacctcgtcaccacacagcactctgcttacgtcatggat
gagcgtttcccctgcctccccatgatccagtgggatcacatgatggagcatcctcccatg
tttgcccaggtcgtggcggggttgccgtcggggggagggactactaaggtgctgctgggc
tctcagagatcacaggaagtgatcctgctacagtactcaggtggtagggaggaggcctgc
gtcaccagaggcccacctcgrgccttgctcagccccagagacagccttggacacctgcct
gtccaactcccccacagacagcaccatgcccaggacagactagccaatcctgctgctggt
cttactgtcatccatcagagtcaagccaaggaggactgtatctgtgtgctgcaactcact
gaggccggagacatcttttaccacacgctaaagtcccagactgagtccttcagtaaagac
gacccaccagcaccaacccagaactccgtgggacccgagggacgtagtggagatgtacag
agactaaaacaaccagttgaaacattaagaaaacagccgcatcaaacgttaggaacctca
agaagtagtgccctaggtgaaacatggtattcctctggaccccagtctcctgcagatgac
tctgggttcgagggaaggggacagccgtgggacactcctagggctggactggagatggtt
atcaacaaccctcatgacgacccgtacctgacgctagcgacaaacacaggattaactgat
actcaggaaaccgctgctactgctcctctacctacagtccagtctttggacactaatgtt
aacattaaccccgtcagcccaaaggccaaagtcagtgatgaggctctgttggtttggagg
aagtggatcctcaaactgttcaagtgcccccggaagcgccgcwatctcccacacaagacc
acaaaaaccaagtatcttctacccgacgacagccttcagaaagacccgttggaagatcac
tgtcgtcggaccctgaggaaggacctgagggaaaccatgaggaatggacatgtcctcgtc
cacaggaacacctgcctcaaacccctggctctggtccctgtcccggcacccgtggagccc
tctgagtgggctgatgtgctgagcgagaggatgagcgcatcgtgggagcctgggctgggg
ggatggaggagctggtgggaggagaggctggggctgaaccgagaggagaaggtgaaggct
ctgcggaggaagaggaggagacagaaacaggcaaaggctcacagtcgtatcgacctatca
ggcagcttcacctcgtccgtcagctaccaatcagacctggacagcgcctctctctccggt
tggtcctcggcagccagtcagtacgccagctccgacggagacagtgcggccaaaagctgc
tacaacaccaagtgggccaccctgtctgagccgggtacaccgagggctaccacaccaaca
ccacagaccagtaactcacagcccacaacacctcatagggtgtttggttcaaaaccaact
acaccactgaagcagcttagtagtttcctctcccagcccactatcccctattcacagagc
agtagcagttcactgcccactatcccctattcacagagcagtagtagttcactgcccact
atcccctattcacagttcactagttccgagccactgtttacaccccaaaaacagcccacc
gttggtaagttgttgccctggacaacagtaggttctgactccagcgcggcgggcattttg
agaacggtggtggcaacccagaagcccaagccacagaatcaggattatttaaattctctc
tttggatcccaggagcctatggatgcctcacagggagtagggtttaatgagagcagacat
catactcctttggccacctcttctcagctgtcctccatctctacttcacagaggaacctg
aaagtgggactgacctcctcacaacccaaaaggaagaagtctcgtatgggtttctga
DBGET
integrated database retrieval system
