Salvelinus sp. IW2-2015 (Arctic char): 112072427
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Entry
112072427 CDS
T05762
Symbol
ddx6
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112072427 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
112072427 (ddx6)
03036 Chromosome and associated proteins [BR:
salp03036
]
112072427 (ddx6)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112072427 (ddx6)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112072427 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
112072427 (ddx6)
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112072427 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
112072427
NCBI-ProteinID:
XP_023995599
LinkDB
All DBs
Position
Unknown
AA seq
493 aa
AA seq
DB search
MSTASTHNPLILGHSSQNGQLRGPVVKVAGGQGSGGGSHQTHQSSQMKQASSTINNGTGP
SSTQLAKATPTANTVIKPGDDWKRNLTLPPKDMRMRTSDVTATKGNEFEDYCLKRELLXG
IFEVGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNQVQMIVLDEADKLLSQDFVVMMDEVLSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIXCNSSQRVELL
AKDVSQLGYSCFLHPAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGSIDKSLYV
AEYHSENGEEVKL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccataacccattgatactgggccattccagccagaatggccag
ctccgaggcccggtggtgaaggttgcaggagggcagggcagcggaggaggaagtcatcag
acacatcagtccagccagatgaagcaggcctccagcacaatcaacaacggcactgggcct
agcagcacccagttggctaaagctacccccacagccaatactgtcatcaagcctggagat
gactggaagaggaatttgacgctccctccaaaagacatgaggatgagaacttcggacgta
acggcgactaaaggcaatgagtttgaagactactgcctgaagagggagctgctgnatggc
atctttgaggtgggctgggagaaaccctctccaatacaggaggagagcatccccatagcg
ttgtctgggagggacattctggccagggccaagaacgggacaggaaagagcggagcctac
ctcattcccctattggaacgtattgacctgaagaaggactgcatacaagcgatgggcatc
gtccccaccagagaactggccttgcaggtgagccagatctgtatccagatcagcaaacac
atgggcggggtgaaagtcatggctacaacgggcggcaccaacctccgcgatgacatcatg
aggctcgacgagacagtacacgttgtgattgccacccctgggaggatcctggacctcatt
aagaagggtgtggccaaagtcaatcaggttcagatgattgttctggatgaggcagacaag
ctgctgtcccaggactttgtggtgatgatggaygaggtactgagctacctgcccaaacag
agacagattctgctctactctgctaccttccctctcagcgtgcagaagttcatgaactcc
cacctgtccaagccctacgagatcaacctgatggaggagctgaccctgaagggggtcacc
cagtattacgcctacgttacagagagacagaaggtccactgtctcaacacactcttctcc
aggctccagatcaaccagtctatcatcntctgtaactcgtctcagagggtggagctgctg
gccaaagatgtatctcagctaggctactcgtgttttctacatcctgccaagatgagacag
gagcaccgtaacagagtgttccacgacttcagaaacggcctctgccggaatctggtctgc
acagacctcttcacaagaggtatcgacatccaggctgtgaatgtggtgatcaactttgac
ttccccaagctgggggagacgtacctgcatcgcatcggcagatctggtcgttttggtcac
ctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctcaagggcatcgag
gagcagctgggaacagagatcagacccatccccggcagcatagacaagagcctgtatgtt
gcagagtaccacagtgagaatggagaggaggtcaagctgtga
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