Salvelinus sp. IW2-2015 (Arctic char): 112073502
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Entry
112073502 CDS
T05762
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04140
Autophagy - animal
salp04148
Efferocytosis
salp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112073502
04148 Efferocytosis
112073502
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112073502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
112073502
Membrane trafficking [BR:
salp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112073502
Hops complex
112073502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
Lact-deh-memb
zf-RING_11
DUF5600
zf-RING_16
zf-RING_2
zf-RING_UBOX
DUF1664
zf-ANAPC11
zf-C3HC4_2
zf-rbx1
DUF4446
zf-RING_5
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
112073502
NCBI-ProteinID:
XP_023996556
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MSSILDEYEDSQNRRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGEDTLLRIDLAKPDQPNQIELGRKDDSRVHKLFLDPTGENREALP
GPHSYFVKYTSPPADKEHPHNRDAATTVRLHSWRRTETNTGPILVGTSQGIIFEAEISAS
EGSLFNTNPDQYFKQVSRELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLY
GQXDYIRPDSVLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLATSDRDVTFFVVVVVH
PQSRYHIQREARDVWQMYMSMNKFDLAKEYCRDRPECIDMVLAKEADHCFQNKRYLESAK
CYALTQNYFEEIALKFIEAKQDEALKEFLLKKLNNLKQSEKTQITLLVTWLTELYLNHLG
LLESDEGKXEVFQETRDEFRKFLSRSKHKECLYNNRTTIYDLLASHGNVDDMVYFSVIMQ
DYERVISHHCQHDDYSAALEVLSKHCDEKLFYKFSPILMQHIPKKVVDAWIQMGSRLEPK
KLIPALVNYSQMGSTQQVNETIRYMEFCVYQLTVTEEAIHNYLLALYAKYKPDSLLWYLE
QAGTHASDIHYDLKYTLRLCAEHGYLQACVLVYKIMELYEEAVDLALQVDVDLAKSCADL
PEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSCNLLKXEDILPFFPDFVTIDHFKEA
ICSSLEEYNQHIDELKQEMEEATESAKRIREDIQEMRNKYGVVERQEKCAACDFPLLNRP
FYLFLCGHMFHYDCLFLEVSPHLSTYKQTKLGELQKKLAAATQTSKSRHRPSPKEKEGGD
TASLGKESAGVSREQIKSDIDDIIAFECVYCGELMIKSIDKPFIDPQKLEEEKSSWL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaagactcgcagaacagraggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggrataacycattcagggtttgtgaatgtgaga
ctcgaagaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtctgcaacaatcagctatgcatgagtttaggggaggacactctt
ctgaggattgaccttgccaagccagaccagcccaaccagatagaactggggaggaaggat
gacagcagagtacacaagctcttcctggaccccacaggtgagaaccgggaagctcttcct
ggaccccacagctattttgtgaagtacaccagtcctcctgcagacaaagaacacccccac
aacagggatgctgccaccaccgtgcgtttgcacagttggagacggacagagaccaacact
gggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgcttca
gagggaagcctgtttaacaccaaccctgaccagtacttcaaacaggtgagcagagagctg
ctgcccagcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacc
tccaagctcaggtcctgccccaaggccttcgcatggatgatgggtaatggagttctctac
ggtcagrtggactacatcaggccggactcagtgctcagtgatgtgcaggtgtgggattac
accccagacatagacttcagtttcaacaagcccatctccatcgtgttgactcagtttcac
tttctactcctcgctactagtgaccgtgacgttacgttttttgttgttgttgttgttcat
cctcaatccagataccacatccagagagaagccagggatgtgtggcagatgtacatgagc
atgaacaagtttgacctggctaaggagtactgccgggaccggccagagtgcattgacatg
gtgctggctaaggaggcagaycactgcttccagaacaaacgttacttggagagtgctaag
tgttacgcgctgacccagaactacttcgaagagattgctttgaagtttatcgaggcaaaa
caggacgaggctctgaaagagttcctgctgaagaaactcaataatttaaaacagagtgag
aagacccagatcaccctactcgtcacttggctgactgagctctacctgaaccacctgggg
cttctagaatcagacgaggggaaacwwgaggtgttccaggagacgcgtgatgagttccgg
aagttcctcagtagrtccaaacacaaggagtgtctctataacaaccgtacgaccatctat
gacctgctggctagccacggcaacgtggacgacatggtctacttctctgtcatcatgcag
gactacgagagggtgatctctcaccactgtcagcatgatgactatagcgccgccctggag
gtgctctctaagcactgcgacgagaagctcttctataaattctccccaatcctcatgcaa
cacatacctaagaaggtggtggatgcctggatccagatgggtagtaggctggagccgaag
aagctgatcccggccctggtcaactacagtcagatgggttcyacacaacaggtcaacgag
accatccgttacatggagttctgtgtttaccagctcactgtgaccgaagaggccatacac
aactacctgctggccctctacgccaagtacaaacctgatagtctcttgtggtacctggaa
caggctggtacccacgcgtcagacatccactatgacttaaagtacaccctgaggctgtgt
gctgaacacggttacctccaggcctgtgtcctggtctataagatcatggagctgtatgag
gaagctgtcgatctggccctacaagtggatgtggacctggccaagtcatgtgctgacctg
cctgaggatgatgaggagttgaggaagaagttgtggctgaagatcgctcgtcacgtggtg
caagaggagaaggatgtgaagaaggccatgaactgtctgtccagctgtaacctgctcaag
atkgaagacatactgcccttcttcccggattttgtcaccatagaccacttcaaggaggct
atctgcagctctttagaggagtacaaccagcacatagacgagctgaagcaggagatggag
gaggcgacggagagcgccaagcggatcagagaggacatccaggagatgaggaacaagtac
ggggtggtggagagrcaggagaaatgtgctgcctgcgacttccccctcctcaacagaccc
ttctatctgttcctctgtggtcacatgttccactacgactgcctcttcctggaggtgagc
cctcacctgtccacctacaagcagactaaactaggtgagctgcagaagaagctggctgca
gccactcagacctccaagtctcgccaccgcccctcccccaaggagaaggaggggggcgac
actgccagcctgggcaaagaaagtgctggagtcagccgtgagcagatcaagtcagacatt
gatgacatcatcgcgtttgaatgtgtgtactgcggcgagctgatgatcaagtcgatcgac
aagccttttattgatccacagaagttggaggaggagaagtccagctggctctga
DBGET
integrated database retrieval system
