Salvelinus sp. IW2-2015 (Arctic char): 112074188
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Entry
112074188 CDS
T05762
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112074188 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
112074188 (cnot3)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112074188 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112074188 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112074188
NCBI-ProteinID:
XP_023997166
LinkDB
All DBs
Position
Unknown
AA seq
958 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVAXSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSLVSMAAVVGG
NPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLLQPQQPQTKPCTPSPPSHPLLSTAPS
LPTPTTPISASPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASL
NTMAGLLSGSTHAPYAQAAALGGLGLSSTTQSSVSMESSSIPTSCSSGVTTNGAGTGLGL
LGSSPAHGSLTGGILGLVPGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVV
GSKAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNGP
SLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQX
PEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLQLTDRDIFSGSS
AAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIR
QYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQS
WRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtcgctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacyatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccakctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgtccttttcctcttcc
gccaattccgggtcctcttcttcctcctctcttgtatccatggccgccgttgtcggaggc
aaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaacaa
catcagcctcaacctccacagcaaccagtcctgcagccactgctacaaccacaacaaccc
caaacaaaaccttgcacccccagcccacccagccaccccctcctctccacrgccccctct
ctccccacacccactacacccatctcagcctccccaaactccctgccccaggtctcgtct
ggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatgacg
gggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctctctg
aacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagccgcg
ttgggaggcctgggtctgagtagcaccacccagtccagtgtctcaatggagagctcctcc
atccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggcctg
ctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcctggg
cagagtgtgatccctgggccccctctgatccctctcagcccggtcggtgctgcccctggg
ggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagtagtt
gggtcgaargcagcccctgccagaccgcccagtggactgaagcagaacggaagcacaagt
tacagtgctgtggtggcagagagcacagcagagtctgccttcagcacacccagccaatca
cagagcagccagccttcctcgctgacctcatcagccagtcagcctatggacaacggtccc
agcctcatcagctccatcaccttaccccccagctctccgtccccctcgttttcagacagt
atccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgagggc
ctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcaggrc
ccagagccyccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcag
gccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggt
ctggatggagagatccccaacctgcarctcacagacagagacatcttctctggttcgtcg
gctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccccct
tccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccagcag
accatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatcagg
caatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccac
cactcagactctatagagttctaccagagactgtcracagagactctcttcttcatcttc
tactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcg
tggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatc
actgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagagg
aagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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