Salvelinus sp. IW2-2015 (Arctic char): 112074572
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Entry
112074572 CDS
T05762
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112074572 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
112074572 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
112074572 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
salp03400
]
112074572 (gtf2h1)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112074572 (gtf2h1)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112074572 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
112074572
NCBI-ProteinID:
XP_023997498
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MTALSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNLHFSNESTALKDRDAAKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVCQVISAEEFWANRLSINNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHDMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVFQGVKNPMVDLLSLEDKSLDEGYGSNSTGPSTSNTNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNGQACETSSTDGNSRDSDFFQPPIKKVKIQDVI
EYEDLHRENGKKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIVNSVNCIKHEIASYRPCL
TQVMSSSTASSAIAALSPGGVLMQALAQQAINQMVPNDVQEELKHLYTAXGELLRHFWSC
FPVNTPFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSTNLTGHLEDMFQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgttgtcggaggaggtgctgctggtggtgaagaaggtccgacagaggaagcag
gatggaaccctatacctgatggcagagaggatagcctggggaccagaggggaaagaccgt
ttcaccgtcagccacctgtatgctgacatacgctgtcagaagatcagcccagatggcaag
gccaagattcagctgcagttggtcctacacacaggggagagcaccaacctccacttttcc
aacgagagcactgccctgaaagaccgcgatgcagccaaggacctcctmcagcagctgctg
cccaagttcaagaagagggcaaacaaggaactggaggagaagaacagaatgttacaggaa
gatccggtgttgttccagctgtacaaggatctggtggtgtgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcataaacaacgtggaccactccctctccaacaacaag
caggaagttggcatctcggcagccttcctggcggacatccggccccagacagatggctgc
aacggccttcgatacaaccttacctctgacattatcgagtcaatcttcagaacgtaccct
gcagtgaaacagaagtacggtgagaacgttcctcatgacatgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcatcaacacgggcctgcaggac
atcttctccgagtgtgcaaagcaggacgagaagggcctgaagtccatggtgttccaagga
gtgaagaacccaatggtggatctgttgtcactggaggacaagtcgttagacgagggttat
gggtctaactccacagggccttctacgtccaacactaacaagacagtgaaggagaacagt
aactctgccataatcaagaggttcaaccaccacagtaccatggtgctggcagcaggctcc
ggaaagaaagcggatgctcctaacggtcaggcctgtgagactagcagtacagacggaaac
tctagggattcagacttcttccaaccacccattaagaaggtgaaaatacaagatgtcata
gagtatgaggaccttcatagggagaatgggaagaagacagtcgctctgaacctcaagaag
tctgacaggtactctcatggtcccgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcgtcaactctgtcaactgtataaagcatgaaatagccagctacaggccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcgctgccctctccccagggggc
gttctcatgcaggcattagcacagcaagccattaaccagatggttcccaacgacgttcag
gaggagctgaagcatctgtacacggctkctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacctttcctggaagagaaggtggtaaagatgaggtccaacctggag
agattccagatgaccaagctccgccccttccaggagaaagtccagcgtcaatacctgagt
actaaccttactggtcaccttgaggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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