Salvelinus sp. IW2-2015 (Arctic char): 112074880
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Entry
112074880 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
salp04515
]
112074880
Cell adhesion molecules [BR:
salp04515
]
Cadherins
Cadherin related
112074880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_pro
TMEM154
CADH_Y-type_LIR
LapA_dom
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
112074880
NCBI-ProteinID:
XP_023997732
LinkDB
All DBs
Position
Unknown
AA seq
1875 aa
AA seq
DB search
MTLNSVEGVAPGSVIGSVRSHDQSDTLSLDGQVTYVVVDGTDRKGTFMVDRVTGDVYLVR
ELDYEEGDRYTLHVEVSDFTLAYPSSHRVQLDINVQDSNDHAPQFTEDPVTIVIPENTQP
GASIYTFQAADKDGSGPNSELRYSIQHRWPDSLHLLTLDPSTGVLTLGQELDHETTSSLY
LVVRATDQAEDVSARRWGSVTARVFVTDENDNAPVFSSSSAVSVMEDQPVGFVVVYAMAR
DEDEGENGRVSYSIQSGNSAGRFSLNPNTGSLSILKALDREDQEVFNLTIIAEDHGMPQL
CTSQVLSVHVIDVNDEPPLFQGEELEAEVRENQEAGTTVITVTATDRDQGSNGQVTYGGV
TEEGFTINPVTGVISTTKTLDRETQDHYTLTVSARDGGLPPNFAKVVVRVLVQDENDNVP
VFARPWYGLEVPESQSPVELCIVRAADADTGPAGDIEYRITAGDPDGDFQLHVSSGALST
SRPLDRELRAGYNLEVVALDRGSPALSSTATVTVTVLDVNDNSPSFSSSSYTVDVSEEAA
QGTTVLEVTATDADEGENGKVLYFLSQEARGAFTVDENTGRITTASPVDREKRASYSFHV
FAVDLSPAEPRNTSAQVTVTILDINDNAPFFIQDPLVVEVSAANHIGSWPPCGPRTRTFV
PTVLCSTVSPRPVRGFSINSLTGEIQGRRGRSLGLDFEDTPRLRLVVKAETASSSSFMAV
NLILQDINDNLPRFQLQNYVAYMREPRVTTCQSYRWWQRTWTRGRRSGDLLYPSSGGMSG
LFKINPVTGSITTAAIMDREIWTKTRLVVTATDRGSPRLAGSATLTVIIVDLNDNSPTIP
LPREVRIPENTLIGTEITLVTGNDVDSSPALSYSLQLDGSSQGKFGIHRYSGGVSLTAPL
DYEDRTWYTLTVRATDSQHQTEANITILVEDVNDNAPAFTHDLYQVTLPEHSPPGSPVVT
VTATDRDSGENGKVTYRVTSSTRGGFYVDPSNGTLFIRERAEFDPENPSVSVVIEACDGG
SPPLSSVTTVQVQLSDVNDNAPVFHQSEYRATVLEDSIPGATILTLEAMDADFSRDNCGF
DFAIANGNTGNVFQIESSVRFLEGRGFQTVGTLLLAEVLDFEAVPLYNLTVVVSDRGVPQ
RSSSVAAVITVGDVNDNPPAFGRAEYAVSLSEGAGAGTEIIRLTATDPDSAPNAEVKYSI
SSGDEMDLFMIDQWTGALRLQRQLDREHQSSHVVIVQATDGHGHVALTPISVEVKDVNDN
RPFFPIETLTASIRENQPVNSAVTILHAIDHDTGMYGQLRYYMVERGQGSGITGREAFTV
DQSSGQVRAKMTFDFETVNSFNFXALAMDAGNHSATVTVQVYVTGEDEYDPLFVSPEFSF
EVPEGAKRGQSIGQVQANDEDGGVDGIVLFSLPSSSLYFDVNKTTGVVFLKMDGSSSRSS
SSGLGGRSKRETRTMTLDVHAHSPLDTSRVTTAQLTIDVTNTSFGLGADLNVLLIIIIAV
SLGVIVLLVVMAVVIFLVKSKRRRKNKGRDNSAVASGTTLQKLDDSKSGGSERIYHQTLP
GYAGDQGGAGAGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASISSSMQEHIS
ARGPDSGIQQDADQLSDISCEPAALEGSTWFKGKKLGGSLSGTMLSGQLPVYRDELGGGY
LGMGRGLNISHPKEYAFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLAN
VFTEIARLKDETAPQNQTNPRQPLQPKAKTDPKPRIDPPPLITAVAHPGAKSVPPKVPVI
GRTFPHLATLRRSPISHEGSISSAAMSPSFSPSLSPLAARSPAVSPFGVTQGPSTSMIST
RDPMLDHSPDHEMRI
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atgactctcaactcagtggagggcgtcgccccaggctctgtcattggttctgtccggtca
catgaccagagtgacacgctgtcattggacggccaggtgacgtacgtggtggtggacggg
acagaccggaaggggacgttcatggttgaccgtgttacgggagacgtgtacctggtcaga
gaactggactatgaggaaggggataggtacactctgcatgtggaggtatcagatttcaca
ctggcgtaccccagcagtcacagagtacagctggacattaacgtccaagacagcaatgac
cacgccccccagttcaccgaggaccccgttaccatagtgataccagagaacacccagccg
ggagcctccatctacaccttccaggctgctgataaggacggcagcggtcccaacagcgaa
ctacgttactccatccagcaccgctggcctgactcccttcacctcctgacccttgaccct
tccactggggtcctgaccttgggtcaggagttagatcacgagaccacgtcttccctctac
ctggttgtcagggcgaccgaccaggcggaggacgtgtccgctcggcgctgggggtcagtg
acagcccgggtgtttgtgacggacgagaatgacaacgctcccgtgttcagctcgtcctcc
gccgtcagtgtcatggaggaccagcctgtcgggttcgtggttgtgtacgcgatggctcgt
gacgaggatgagggagagaacggacgagtgtcctacagcatccaatcagggaacagcgct
ggacgtttcagcctgaaccccaacaccggctctctgtccattctgaaggctctagatcgt
gaggaccaggaagtgtttaacctgaccatcatagctgaggatcatgggatgccccagctg
tgcaccagtcaggttctgtctgtccacgtgattgatgtgaacgatgagccgccgcttttc
cagggggaggagctagaggcggaggtcagagagaaccaggaagcgggaaccacggtgatc
accgtcacggcaacggacagagaccaaggttctaatggccaggtgacatatggaggtgta
acagaggaaggcttcaccatcaaccctgtgacaggggtcatcagcactaccaagaccctg
gacagagagactcaggaccactacacactcacagtgtctgccagggacgggggcctgcct
cctaactttgccaaggtggtggtgcgtgtgttggtgcaggatgagaacgacaacgtgccg
gtgttcgccaggccctggtacggcctagaggtccctgagagccagagccccgtggagctg
tgtattgtcagggctgctgacgcagacacgggacccgctggagacatagagtacaggatc
actgctggagacccagacggagacttccaactccatgtcagttcaggggccctgtccacg
tctcgtcccctggatcgggagctgcgggctgggtacaacctggaggtggtggccctggac
cgtggttctcctgctctgagcagcacagccacagtgacggtgacggtgctggatgtaaat
gacaacagtccatccttcagcagcagcagctacaccgtagacgtctcagaggaggctgcc
cagggaacgacagtcttagaggtcacggccacagacgcagacgagggggagaacgggaag
gttctgtatttcctgagtcaagaggcgaggggcgctttcactgttgacgaaaacactggg
cgtatcacaacggcgtcgccggtggaccgagagaagagggcgtcgtacagcttccatgtg
ttcgctgtggacctgtcacctgcagagcccagaaacacctcagctcaggtcacagtgacg
atcctggacataaacgacaacgctccattcttcatccaagaccccctcgttgtcgaggtc
tcggcagccaatcacatcgggtcctggccaccatgcgggccgaggacaaggacttttgtg
ccaacggttctgtgttctaccgtttcgccgcgtccggtgaggggtttcagcatcaactcc
ctaacaggagagatccagggacgaaggggaaggtcgttgggtctggactttgaggacact
ccccgactccgcctggtagtgaaggctgagacagcttcgtccagctccttcatggccgtt
aacctgatcctgcaggacatcaatgacaacctgcctcgcttccagctccagaactacgta
gcctacatgagagagcccagggttacgacatgccaatcatacaggtggtggcagaggacg
tggaccaggggcagacggtcaggtgacttactctatccatcatcaggaggcatgagcggc
ctgttcaagatcaaccctgtcacaggaagcatcaccaccgccgccatcatggacagagag
atctggactaagaccaggctggtcgtcacagcgacagacaggggcagcccgcgattggcc
ggttcggccacactcacagtgatcatcgtagacctcaacgacaacagtccaacgatccct
ctgccccgggaggtccgcattcctgagaacaccctgatcggcacagagatcaccttggta
acgggtaatgacgtggactccagcccggccctgtcctacagcctccagctggacgggtcg
tcccaggggaagtttgggattcaccgctacagtggaggggtgtctctgaccgcccctytg
gactacgaggacaggacctggtacacactgaccgtcagggctactgactcccaacaccag
actgaggctaatatcaccatattggtggaggacgtcaacgacaacgctcctgcgttcaca
cacgatctataccaggttacactgccagaacattccccgccaggcagtcccgttgtcacg
gtgacggcgactgaccgtgattcgggtgagaatggaaaggtcacctacagagtgacgtcg
tcaacgcgaggtggcttctacgtcgaccccagcaacggcaccctgttcatcagggagagg
gccgagtttgacccagagaacccgtccgtcagcgtggtcatcgaggcctgtgacggggga
tccccgcccctctcctccgtcaccacagtacaggtccagctatcagacgtcaacgacaac
gctcctgtcttccaccaatcagagtacagggcgacggtgttggaggactccatccccggg
gcgaccatcctgaccctggaggccatggacgctgatttctctcgggacaactgcggcttc
gacttcgccatcgccaatggcaacactgggaacgtcttccagatcgagagcagcgtgcgc
ttcctggaggggcggggcttccagaccgtagggacgctcctattggccgaggtgctggac
ttcgaggctgtgcccctctataacctgacggtggtggtgtcggacagaggggttccacag
cggagttctagcgttgccgcggtgataaccgttggcgaygtaaacgataacccgccggcg
ttcggcagggcggagtacgccgtgtcactgagtgaaggagcgggcgccgggacggagata
atacgactcactgccacagacccagactcggcccccaacgcagaggtcaagtacagcatc
agctcaggcgatgagatggacctgttcatgatcgaccagtggaccggggcgctgcggtta
cagcgacagctcgaccgcgagcaccagtcctcccacgtggtcatcgtccaggccacggat
ggccacggtcacgtcgccctgaccccgatcagcgtagaggtcaaagatgtgaatgataac
agaccgttcttccccatcgagactctgacggctagcatcagagagaaccagccggtcaac
tcagccgtgaccatactccacgccatagaccacgacactgggatgtacggccagctgagg
tactacatggtggagcgaggtcaagggtcaggaattacagggcgagaggccttcaccgtg
gaccagagttcaggacaggttagggctaagatgacttttgactttgagacggtaaactca
tttaattttrttgctctggcaatggacgccggtaaccactcggccacggtgacggtccag
gtgtacgtgactggtgaggatgagtacgacccactattcgtctccccagagttttccttt
gaggttccagagggggcgaagaggggccagagcatcggacaggtccaggcaaacgacgag
gacggaggtgtagacggtatcgtcctcttctcgctcccaagctcctccctgtactttgac
gtcaacaaaacaaccggggtggttttcctcaagatggacgggtcttctagtcgcagcagc
agcagcgggttaggggggcggtccaaaagggagaccaggaccatgactctggacgttcac
gcccacagccctctggacacgtcccgggtcaccacggcccagctgaccatcgatgtgacc
aacacgtccttcggcctgggggcagacctcaacgtcctgctgattatcatcatcgccgtg
tccctgggggtcatcgtgctactggtggtcatggctgtggtcatcttcctggtcaagtca
aagagacgcaggaagaacaaaggacgggacaacagtgccgtggcctcgggaaccactctg
cagaaactggacgattccaaatctggaggatctgagagaatctatcatcagacgttacct
gggtacgccggcgaccaaggtggagcaggggccgggccctacccccgggggggttccctt
gacccctcacactccagcgggcgtggctcagccgaggcggcggaagacgatgagatcagg
atgatcaacgagtacccccgcgtagcgtccatctcctcgtccatgcaggagcacatctca
gcccgcgggccggactctggcatccagcaggacgctgaccagctgtcggacatctcctgt
gagccggccgccctggaaggaagcacctggttcaaaggcaagaagctgggagggagtctc
agtggaaccatgctgtctggacagctacctgtctacagagacgagctgggaggagggtat
ctggggatggggaggggactcaatatctcccatcctaaagagtacgccttcccagaggat
gggaagccctcggtggacgggtctctgacagccatagtggccagtgacgaagagctaagg
ggcagttataactgggactacctgctcaactggtgccctcagttccaaccactagccaac
gtcttcacagagatcgccaggctcaaagacgagacagccccacagaaccagaccaaccca
cgccagcccttacagcccaaagccaagacggaccccaagcctcgcatcgacccaccgccc
ctcatcaccgccgtcgcccaccctggggccaagtccgtccccccaaaggtccctgtcatc
ggacgcaccttcccccacctggccaccctacgacggtcccccatcagccacgagggctcc
atctcctcagcagccatgtcccccagcttctccccctctctctcccctctcgccgcccgc
tcccccgccgtctcccccttcggagtaacccagggcccctcgacctccatgatcagtacc
agggatcccatgctggaccacagccccgatcacgagatgaggatctga
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