KEGG   Salvelinus sp. IW2-2015 (Arctic char): 112077135
Entry
112077135         CDS       T05762                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112077135 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    112077135 (cstf1)
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     112077135 (cstf1)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 CSTF1_dimer WD40_Prp19 Beta-prop_WDR5 Beta-prop_EML_2 WDR55 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_RIG_2nd EIF3I Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st Frtz WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_IFT140_2nd Beta-prop_WDR36-Utp21_1st DUF7099
Other DBs
NCBI-GeneID: 112077135
NCBI-ProteinID: XP_023999485
LinkDB
Position
Unknown
AA seq 262 aa
MYRPKPTLRDRQHLYRLIISQLLYDGYTNIANNLITEVKPQSVVSPSENLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQSMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKVLDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHVQEAEMLRAISFHPSGDFLLVGTQHPT
LRLYDVTPSNASVSCEPSRPAY
NT seq 789 nt   +upstreamnt  +downstreamnt
atgtatcgtcccaaaccgacgctgcgggaccggcagcacctgtaccggctgatcatcagc
cagttgctgtatgacggttacaccaacatcgccaacaacctcatcacagaggtgaagcca
cagagcgtcgtgtcgccctctgagaacctcatgcagctggccaagataggcatggagaat
gatgacagcgcggtgcagtatgccatcgggcggtctgacacagtggcaccaggcgttggc
atcgacctggagtttgacgctgacgtccagtccatgtcccccgaggcgtctgagtacgag
acttgttacgtgacgtctcataagggtccgtgtcgcgtggccacctatagccgggacggg
cagctcatcgctacgggctctgcagacgcctccatcaaagtcctggacacagagcgtatg
ctggccaagagtgccatgcccatagaggtgatgatgaatgagacggcccagcagaacatg
gagaaccaccctgtgatcagaacactgtacgaccacgtggatgaggtcacgtgtctggcg
ttccaccccacggaacagatcctggcgtctgggtcacgtgactacaccctcaaactgttt
gactactccaagccctctgccaagagagccttcaaacatgtacaggaagcggagatgctg
cgggccatctccttccacccgtcaggagacttccttttggtggggacgcaacacccgacc
ctccgcctctacgacgttacaccttccaatgcttccgtctcctgcgaaccctctagacca
gcatactga

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