Salvelinus sp. IW2-2015 (Arctic char): 112079181
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Entry
112079181 CDS
T05762
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
salp03016
]
112079181 (rtcb)
Enzymes [BR:
salp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
112079181 (rtcb)
Transfer RNA biogenesis [BR:
salp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
112079181 (rtcb)
Prokaryotic type
tRNA splicing ligases
112079181 (rtcb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
112079181
NCBI-ProteinID:
XP_024000972
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYXDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMNQIGNVAALPGIVHRSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGAVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGGDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVCD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatrtggacaagattgacaagaactgttgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggagtgttttacgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggmtttggt
gggtttctccctgccatgaaycagattggwaacgttgcagctctgccgggaatagtccat
aggtccatcggcctgccagactgccactcggggtatgggttcgccatcggaaacatggct
gcctttgacatgagcgaccccaacgcggtcgtatccccaggtggtgtgggctttgacatt
aactgtggagtgcgtctactaaggaccaacctagacgagggagccgtccagcctgtcaag
gagcagctggctcaggccctgttcgaccacatccctgtcggagtcggctccaagggagtc
atccctatgaccgccaaggacctagaggaggctctagagatgggaggggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgcctcagctgggt
actctgggagcagggaaccactatgcagagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggtatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggctacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgctcggatcttttca
gaggagggacaggactacctgaaaggaatggccgccgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccaccactcct
gatgacttggacatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtagatgggaaacagaagactctgctgctgcatcgcaagggatccacccgggcc
ttccctccacaccaccccctcatccccgtagactaccagctgacaggccagccggtgttg
atcgggggcacgatgggcacctgcagttacgtcctgacgggcacggagcagggcatgacg
gagaccttcggtaccacctgccacggagcgggtcgggctctgtctcgggccaaatcccgc
aggaacatagacttccaggacgtgttggacaagctggcagaccagggtatcgccatcagg
gtggcttcgcccaaactagtcatggaagaggctccagagtcgtacaaaaatgtgtgtgat
gtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgacccatc
gccgtgatcaagggataa
DBGET
integrated database retrieval system
