Candidatus Syntrophocurvum alkaliphilum: SYNTR_0599
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Entry
SYNTR_0599 CDS
T06326
Name
(GenBank) RNA polymerase sigma factor for flagellar operon
KO
K02405
RNA polymerase sigma factor FliA
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq02020
Two-component system
salq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SYNTR_0599
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SYNTR_0599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salq03021
]
SYNTR_0599
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
salq02035
]
SYNTR_0599
Transcription machinery [BR:
salq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNTR_0599
Bacterial motility proteins [BR:
salq02035
]
Flagellar system
Flagellar assembly proteins
Stator
SYNTR_0599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_10
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
QGT99192
UniProt:
A0A6I6DEV0
LinkDB
All DBs
Position
599078..599851
Genome browser
AA seq
257 aa
AA seq
DB search
MSSSELSLLWEKYKDHDDLEARDKLIIHYAPMVKYVANRLAINLSSVVETDELISYGIEG
LIDAIERYDHTRNIKFETYAVTRIRGSMIDGLRSMDWVPVSIRQKSKELEKVYTKLEAKL
GRSATDEEVAKEMGISVDDLHQLLKDVASTTIISLDDFITGDEEDNKKRIIDMLEDNNST
GTVELVEFREIKDILAKSITKLPEKEKTVIYLYYYEGLTLKEIGAVLTLSESRISQLHTK
AILRLRGSLSKKKQLLF
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtagcgaattaagccttctttgggaaaaatataaagaccatgatgatttagag
gctagagacaaacttataatacattatgcacctatggttaaatatgtagctaatagacta
gctattaatctttcatctgttgtagaaacagatgaactaatctcttatggtatagagggt
ttaattgatgctatagaaagatatgatcatacaagaaatattaaatttgaaacttatgca
gtgactcgtataaggggttcaatgatagatggattacgttcaatggactgggtaccagtt
tctatcagacaaaagagtaaagaattagaaaaagtttatactaagcttgaagctaagctt
ggcagatcagctactgatgaggaagttgcaaaagaaatggggataagtgtagatgaccta
catcaattattaaaagatgttgcatctactacgataatatcattagatgattttattaca
ggtgatgaagaggataataaaaaaagaattattgatatgcttgaggataataattctaca
ggcacggttgagctagtagaatttagagaaataaaagatattttagccaaatcaattact
aaacttcctgaaaaagaaaaaacagttatttacttgtattactatgagggtttaactctt
aaagaaattggagcagtattaactttatcagaatctcgaatatcacagcttcataccaaa
gctattcttaggttgagagggagtttaagcaagaaaaaacaattacttttttaa
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