Candidatus Syntrophocurvum alkaliphilum: SYNTR_1006
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Entry
SYNTR_1006 CDS
T06326
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
salq03016
]
SYNTR_1006
Enzymes [BR:
salq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SYNTR_1006
Transfer RNA biogenesis [BR:
salq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SYNTR_1006
Prokaryotic type
tRNA splicing ligases
SYNTR_1006
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGT99599
UniProt:
A0A6I6DBB4
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All DBs
Position
complement(999115..1000260)
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AA seq
381 aa
AA seq
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MKTFNIGSIPIKSWTSNIEEGAMQQAINLSKHPFAYKHIAIMPDVHEGYGMPIGGVLATK
DVIIPNAVGVDIGCGVIALQTDKKTITQHEVKNLIETCRKFIPLGFKHHKKPQLWDGFDN
APNLPIINQEITSAKKQIGTLGGGNHFIECQKGDDGYIWLMVHSGSRNIGLKVAKYYNDA
AKELNRKINSSIPKEYDLAYLPLNTELGNDYYNAMNFCLEFARANRTKIAYKVFEIFIDI
VGPVKIQQKIDIQHNYAAVEEHFNSQLIIHRKGATSAKKGQLGIIPGSMGTASYIVKGLG
NTESFMSCSHGAGRVMSRKKANKCITEEMANEVMKGIYFGSWKNDYSEAPLAYKNIEDVL
KQQTELVKKLVKLKPLGVLKG
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttttaatatagggagtataccaattaaatcatggacttctaatattgaagaa
ggtgcaatgcaacaggcgataaacctttctaaacatccatttgcatataaacatatagca
attatgcctgatgtgcatgaaggatatggaatgccaattggaggagtattagcaactaag
gatgtaataattccaaatgcagtaggtgtagatattggttgtggggtaattgcattacaa
acagataaaaaaactataactcagcatgaagtaaaaaaccttattgaaacatgtagaaaa
tttatacctttaggttttaaacaccataaaaaacctcagctatgggatggttttgacaat
gcaccgaatttacctataataaaccaagaaataacatctgcaaaaaagcaaataggtacc
cttggaggtggcaatcattttattgaatgtcaaaaaggagatgatggatatatttggtta
atggtgcattcaggaagcaggaatattggacttaaagtagcaaaatactataatgatgca
gcaaaagaattaaaccgcaaaattaactcatctatacctaaagaatatgatctagcatat
ttaccattaaatacagaactaggaaatgactattataatgcaatgaatttttgtttagaa
tttgctcgggcaaatagaacaaaaatagcttataaagtctttgaaatatttatagatata
gtagggccagtcaaaatccaacaaaaaatagacattcaacataactatgctgctgtagag
gagcattttaatagccaactaattattcatagaaaaggtgcaacaagtgccaagaaagga
caattagggattataccaggttcaatgggaacggcttcatatattgtgaaaggattaggt
aatactgaaagctttatgtcatgttcacacggtgcaggaagggtaatgagtagaaaaaaa
gctaacaaatgtataactgaggaaatggcgaatgaagtaatgaagggtatttattttggt
tcatggaaaaatgattactcagaagcaccattagcatataaaaacattgaagatgttttg
aagcaacaaacggaattagttaaaaaattagtaaaattaaagcctttaggagtattgaaa
ggttag
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