Candidatus Syntrophocurvum alkaliphilum: SYNTR_1943
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Entry
SYNTR_1943 CDS
T06326
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SYNTR_1943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salq03400
]
SYNTR_1943
Enzymes [BR:
salq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SYNTR_1943
DNA repair and recombination proteins [BR:
salq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SYNTR_1943
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
SNF2-rel_dom
Cas3-like_C_2
AAA_7
Gp89
TniB
MFD_D3
Polysacc_synt_2
cobW
UB2H
Motif
Other DBs
NCBI-ProteinID:
QGU00537
UniProt:
A0A6I6DKU4
LinkDB
All DBs
Position
complement(2001207..2004413)
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AA seq
1068 aa
AA seq
DB search
MNTQFFGEVKNHLNDDKNILLTGLTGSSKSFFINEVYKNKRGKMLCIVPNEEKAYDLEKE
LKALVGKNKVFLFLTREFAFIKENLSKIETQRILTLRELLFHPKRSGYIITTPGALLYKM
LSPNQIKEKTIEIEIDNDINIDNLLKKWVEAGYTRNETVRSPGEFAVRGGIIDVFPVGEE
HPYRIELFGDTVDSIHKFDPDTQRSEKKEKRVIITPADELQGEKLESTLMDHFSKDITIF
FDEPREFFKTYDRETRRYNEFKKEAEKEEKDIKKLYLTNRNELSEIINKKTVIYHSFFPG
NIPQVKVAMLENISQKEMEPFYNNYETLILRLKEWLQKNYTVKVALKSKPFKKQLQEQFI
DNHLSGVELIDLNLEKGFVSQTFKYALITEQDIRGKKAGKKPSTKKKEAKIILEDLKIGD
YVVHETYGIGIYRGVTQANVDNVIKEYLLLQYAGTDKLYLPVDKLDLLYKYTISEEKQPR
LNKLGGTEWEKTRKKVSKSIQELAEELLRLYAMRENVQGYAFAPDTPWQMQFEDEFPYQE
TPDQLKSIKEVKQDMERQRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVALLVPTTVL
AEQHYESFKQRFANYPAIVEVLSRFRTPKEQKKVIEDLNKGAVDIVIGTHRMLSKDIKFK
ELGLLIIDEEHRFGVAQKEKIKALKELVDVLSLSATPIPRSLHMSLTGLRDLSVIETPPP
ERYPITTYVLEYNEEIIREAVLAEIDRGGQVFFVHNRIQDIYKVKEELEKVLPGLNIAVG
HGRMKEEELSKVLLDFNKGAYHILLCTTIIESGLDMPNVNTIIIDGADRMGLAQLYQLRG
RVGRSNRLAYAYLTYRPEKVITEAAQKRLNAIREFNELGAGMKLALRDLEIRGAGNILGP
EQHGYIQAVGFDLYVRLLEEETQKLKGEKPKEVTNPQLDIDVDYYIPDSYIPDSGTKIRI
YRRLLLATEQEEVEEIRKEILDRFGNLPQPVENFLQIALLRIQAKNKEIKGIKRKGKQME
ITLNRPLNKDVVQHLKEVRMKTPNEYTIQLKLDSSKSITELQTLLGKL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacacagttctttggggaagtaaaaaatcatttaaatgatgataaaaatatatta
ttaactggactgacaggtagctctaagagtttctttataaatgaagtttacaaaaataag
cgtggaaaaatgctttgtatagtacctaatgaagaaaaagcctatgacttagaaaaagag
ttaaaggctttagtgggtaaaaacaaagtctttttatttcttactcgagaatttgcattt
ataaaagaaaacctatctaaaattgagacgcaacgaatattaacacttagagaactttta
tttcatccaaaacgctccggttacataataactacacctggagcacttttatataaaatg
ctttcacctaaccaaataaaagaaaaaaccatagaaatagaaatagacaatgacattaat
atagacaacttgttaaaaaaatgggtagaagcaggttatactcgaaacgagacagttaga
agtccgggtgagtttgcagttcggggtggaataattgatgtatttccagttggggaagaa
catccttatcgtattgaactctttggtgacacagtagactcaattcataaattcgatcca
gatacccaaagatcagaaaaaaaagaaaaaagggtaataattacacctgcagatgaactt
cagggagaaaaattagaatcaaccttaatggatcatttctcaaaagatataactattttc
tttgatgaacccagagagtttttcaaaacatacgatagagaaactagaaggtataatgaa
tttaaaaaggaagctgaaaaagaagaaaaagatataaaaaaactatacttaactaataga
aatgagctatctgaaataataaataaaaaaacagttatttaccattcattttttccgggt
aacatcccccaagttaaggtggctatgctagaaaacatttcacaaaaagaaatggaacca
ttttataataactatgaaaccttgattttaaggcttaaagaatggcttcaaaaaaactat
actgttaaagttgctctaaaaagtaagccatttaaaaaacaattacaagaacagtttatt
gacaaccatttaagtggagtagaattaatcgatttaaacttagaaaaaggctttgttagt
caaacatttaaatatgcactaataactgagcaggatataagagggaaaaaagcaggtaaa
aaaccatctactaagaaaaaagaagcaaaaataatattagaagatttaaaaataggagat
tatgtagttcatgaaacctatggtataggaatataccgaggggttactcaggcaaatgtt
gataatgttattaaagaatacctactattgcaatatgctggaactgacaagctctattta
cctgtagataaactggacttattatacaaatatactatctctgaagaaaaacaaccaagg
cttaacaagcttggtggaacagaatgggaaaaaactcgcaaaaaggtatccaaatcaata
caggagttagctgaggaactgctccgattatatgctatgcgcgaaaacgtacaaggatat
gcatttgctcccgatactccatggcaaatgcaatttgaagatgaatttccctaccaagaa
actcctgaccaactaaaatcaattaaagaagtaaaacaagatatggaaaggcaacgccct
atggatagattgatatgtggggatgttggctatggcaaaacagaagtagcattaagagca
gcttttaaggcagtaatggatggtaaacaagtagctttactagtgcctacaactgtatta
gctgagcaacattatgaatcctttaaacagcgatttgcaaactatccagcaatagtagaa
gtattaagtagatttagaacaccaaaggagcagaaaaaagttattgaggacttaaacaaa
ggagctgtagatattgttataggtacccatagaatgctatcaaaagacatcaaatttaaa
gagctaggtttattaataatagatgaagaacatcgctttggagtagcccaaaaagaaaaa
ataaaggcactaaaagaattagttgatgttcttagcttatcagccacacctataccaaga
agtttacatatgtctcttactggacttagagacttaagtgtaatagaaacccctccacca
gaaagataccctataacaacatatgtattagaatataacgaggaaataataagggaagct
gttttagccgaaattgacagaggaggccaggttttctttgtacataaccgtattcaggat
atatataaagtaaaggaagaattagaaaaagtactaccaggactaaacattgctgttgga
cacggaaggatgaaggaagaagagcttagcaaagtactactagattttaataaaggagct
tatcatattttattatgtactactataatagaatccggtcttgatatgcccaatgtaaac
actattataatagatggggcagacagaatgggattagctcaattatatcagcttcgtgga
agagtggggcgttctaatagacttgcatatgcatatttaacctatcgacctgaaaaagta
ataaccgaagcagctcagaaaagactaaatgcaataagagaattcaatgaactaggtgcg
ggaatgaaattggctttaagggacttagaaattaggggtgctggtaatatattaggacca
gaacagcatggatatatacaggctgtaggatttgatctttatgtaagattactagaagag
gaaacccaaaaattaaaaggtgaaaaacccaaagaggttactaatcctcaattagacatt
gatgtagattactatattcctgatagctatatacctgattcaggcaccaaaattcgaatt
tatcgcagattattactagcaacagagcaggaagaggtggaagaaatcagaaaagaaata
ctagaccgctttggcaacttacctcaaccagtagaaaacttcttgcaaattgcattacta
cgaattcaggctaagaataaagagataaaaggaataaaaagaaaaggcaaacagatggaa
ataaccctaaacagaccgttgaataaagacgtagttcagcacctaaaagaagtaaggatg
aaaacaccaaatgaatatacaatacaactaaaattagacagttctaaatccataaccgag
ttacaaacattactaggtaaattataa
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