Candidatus Syntrophocurvum alkaliphilum: SYNTR_2072
Help
Entry
SYNTR_2072 CDS
T06326
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salq
Candidatus Syntrophocurvum alkaliphilum
Pathway
salq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNTR_2072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salq03019
]
SYNTR_2072
03009 Ribosome biogenesis [BR:
salq03009
]
SYNTR_2072
Enzymes [BR:
salq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYNTR_2072
Messenger RNA biogenesis [BR:
salq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYNTR_2072
Ribosome biogenesis [BR:
salq03009
]
Prokaryotic type
rRNA helicases
SYNTR_2072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Hyccin
AAA_22
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGU00666
UniProt:
A0A6I6DF17
LinkDB
All DBs
Position
2128983..2130410
Genome browser
AA seq
475 aa
AA seq
DB search
MTTFRDLNLASEIIEATTDMGFEEPTPIQTKTIPLALEGKDLIGRAQTGTGKTAAFGIPI
VDKCDPTVNHIQAIVITPTRELAIQVAEELNKIGHNKGIKSLPIYGGQDIERQIRALKKG
VQVVIGTPGRLMDHMRRRTIRLQQLKMVVLDEADEMLNMGFREDIEEILEQVPEQRQTLL
FSATIPPHIKNLARKFMHNPETININPSEVTVRNITQQYIEIPESKKLDVLCRFLDIYNS
EMTMIFSRTKKRVDEISEALTKRGYSAEGIHGDLTQGQRDHVMRKFKSGSVEILVATDVA
GRGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGETGVSTTFVTPREIGHLRVIEELTK
QKITRKPVPTVSEAFEGLQRMVVESLLVAVEKGDNQEYEALAKSLLEEHDSVTLLSTALK
MLTKEPVDAPAVELSSAPPIKVREENKNRSKKRNYSDKKTNHHKKYNKKGRAKTR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttagagacttaaacttggcttctgaaataatagaagctacaacagacatg
ggatttgaagaaccaactcctattcaaactaaaacaataccactagcactagagggtaaa
gatttaatcggaagagcgcagacaggaacaggtaaaacagcagcgtttggcatacctatt
gtagataaatgtgatcccacagttaaccatatacaagcaatagtaataacaccaacacgt
gaattagctatacaggttgctgaggaacttaataaaattggacataataaaggaatcaag
tctttaccgatttatggtggacaagatatagaaagacagattagagcacttaaaaaaggt
gttcaagtagttataggaacacctggccggctaatggatcatatgagaagaagaaccata
cgtttacagcagctaaaaatggttgtacttgatgaggctgatgaaatgcttaatatgggc
tttagagaagacattgaggaaatacttgagcaagtacctgagcaaagacagacattactt
ttttccgcaacaattcctccacatataaaaaaccttgcacgtaagtttatgcacaatcca
gaaactattaacataaatccaagtgaagtgacagtgcgaaatataacacaacaatatatt
gaaataccagaatcaaaaaaattagatgttttatgcagatttttagatatatataattct
gaaatgacaatgatttttagtagaacaaaaaagcgagtagatgaaatatctgaagctcta
actaaaagaggttattctgcagaaggcatacatggcgatttaactcagggacaaagagat
cacgtaatgcgcaaatttaaatcaggtagtgttgaaatattagtggcaacagatgttgct
ggtagaggtttagatatatcaggtgttacccatgtttataattttgatattccacaagac
cccgaaagctatgttcatcgaataggaagaaccggaagggctggagaaacaggcgtttcc
accacctttgttacaccacgagaaattgggcatttaagggttatagaagaattaactaag
caaaaaattactcgtaaacctgttccaacagtaagcgaagcttttgaaggattacagcgt
atggttgtggaaagtttattagtggctgtagaaaagggagacaatcaagagtatgaagct
ttagcaaagagcttactagaagaacatgattctgttacccttctatcaacagcacttaaa
atgttaactaaagaaccagtagatgctccagcagttgaattatctagtgctccaccaata
aaagttagggaagaaaataaaaaccgcagcaaaaagagaaattatagtgataagaaaacc
aaccatcacaagaaatataataaaaaaggtagggcaaaaacaaggtaa
DBGET
integrated database retrieval system
